trnaw-cca_39


Basic Information

Item Value
gene id trnaw-cca_39
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25598677 ~ 25598748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnaw-cca_39
GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGgtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaw-cca_39 True 72 tRNA 0.58 1 25598677 25598748

Neighbor

gene id symbol gene type direction distance location
nudt12 nudt12 coding upstream 66718 25522975 ~ 25531959 (+)
prdm6 prdm6 coding upstream 157467 25398983 ~ 25441210 (+)
snx2 snx2 coding upstream 252578 25323117 ~ 25346099 (+)
sncaip sncaip,LOC103399731 coding upstream 294562 25297056 ~ 25304115 (+)
znf438 NA coding upstream 883444 24641088 ~ 24715233 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding downstream 3653 25602401 ~ 25612117 (+)
LOC103036292 LOC103036292 coding downstream 26498 25625246 ~ 25633257 (+)
LOC103021869 NA coding downstream 38711 25637459 ~ 25640853 (+)
LOC103035969 LOC103035969,LOC108430321,LOC108265984 coding downstream 43558 25642306 ~ 25651303 (+)
aaed1 aaed1 coding downstream 931560 26530308 ~ 26534076 (+)
trnaw-cca_38 NA non-coding upstream 762 25597844 ~ 25597915 (+)
trnaw-cca_37 NA non-coding upstream 1593 25597013 ~ 25597084 (+)
trnaw-cca_36 NA non-coding upstream 2927 25595679 ~ 25595750 (+)
trnaw-cca_35 NA non-coding upstream 3760 25594846 ~ 25594917 (+)
trnaw-cca_34 NA non-coding upstream 4593 25594013 ~ 25594084 (+)
G54478 NA non-coding downstream 47367 25646115 ~ 25646745 (+)
G54489 NA non-coding downstream 129635 25728383 ~ 25728597 (+)
G54499 NA non-coding downstream 178346 25777094 ~ 25796977 (+)
G54501 efna5,LOC104966306,LOC108265807,LOC108430322,LOC106915262 non-coding downstream 216668 25815416 ~ 25815745 (+)
G54529 NA non-coding downstream 495604 26094352 ~ 26096365 (+)
srp19 srp19 other upstream 49183 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 489806 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1307912 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 3677083 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 3851597 21673574 ~ 21747080 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 938304 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 1364144 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1421496 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 1434087 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 1612554 27211302 ~ 27222867 (+)

Expression


Co-expression Network