XLOC_000788


Basic Information

Item Value
gene id XLOC_000788
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56873097 ~ 56878634 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003250
TGATCTGCTGCTCTTCAACACGGTAAGACAAACACACTGGTATTTGACTGATGATTAGTGTAGATGAAGCTCATATAACACATGATTTGTGACATGAGAAATATCTTGTGTTGATCTCAGTCATCAGTTGATTTACACACACTGATGTTGTGCATTAATAATCTGCAGATGTGTAAAGATCTTCCTAACACTAAGAGCTGTTTAGGGTGATGTACATTTACTGTTGATGAGTGTAGAAGTGATGATTAATGCTGGATTCTAGATAGATTTGATGCTGATGTGGCTCAGAAtggctcctgctcttcatctgatCTTTCTGCTCATCATTCACAGTGAGTCAATCTTACATTCACATCACTGCTTTATTTCTCTGCATTTACACACACCACACAATCAGACATTATTCAGCAGGTTTCTTATCATCTTCTCTCTGATATAGGAAGTTAGGCTGTGCTGGAGGATCTGTTTTCTCAGTAGAGAGTCTTTAGTTAAAGTGTCATGAAACCAGCCTGTTTTAGCAGTTTCTTTCACACGTTTGGTTTCGGATGTGATGCATTAAGCGCTGGCAGCTTTTAACAGCAAGTCAATGGCAGTGTTTTTGACAACAGTCAGTTTCTATTTCCTGCTAATTCCTTGATGTCGACTTCCTCGGTGTGTCTTCCTTGGCTTAAACAGTGATTATTCATTACATCCCCTgagaaacatttattcattcattcattttcttgtcggcttagtccctttattaatctggggtcgccacagcagaatgaaccgccaacttatccagcaagttttttacgcagcacatgcccttccagccacaacccatctctgggaaacatccaaacacacattcacacacacacacacactacggacaatttagcctacccaattcacctgtattgcatgtctttgggggaaaccggagcacccagaggaaacccacgcgaagtcagggagaacatgcaaactccacacagaaacgccaaccgagccgaggttcaatccagcaaccttcttgctgtgaggcgacagcaatacctactgcgccactgcctcacctgaGAAACATTTaacatctaaatattaaaaactaacttttttttttttttggtgaactttaCTGTTGATCAGCAAACACAAAACTAATGCTTCAGCACACAATTATTACAGCATTTGTGGAGATATAAAATCAACAGTATTCAGGaaaataacactttacaataaaaatagcaaataataatGAACTAACATGTAATCTACATTTGACTTTATTATGAACTACTGATGAGTTGAGGCGTGTGGTTATATGAGTTTTAGTTTTTGGGTGAGATATCTCTTTAATATTCTTTATCATTTAGCAGAATACATTTACCTCGATCTAAAGTGTTAATTAATTGACAAACATACAGGAACAAGTAATTTAGGTAGTTATTGATCACATCACTAGTTCATAATAAAGAAACTTGTAGTTTGCATTTTAgtacatcattatttaaataggTCTTTTTGTCCAGTTATTTTCCATTACTGTTTTTTCTCAGTTGGTTTATTTTCTCTGTTCTCTGTTTATATCTGTCCTCCATCAAGACTGAAGTCATTCACACTGACATCATTATTCATATTCACAACATCAGCCTAAAATATCATCTGTAATGAGTCACTGTGTACAACTAGTAAACCAGCATGTGTCCCTAGTGTCTTATAATCCAGTTTACTGATAAAACTACATTTGAATCATGATTATTTTTGTGTTTCAGGGGTTTCTGCTGCTGGTTGGGGTGTGAATTACAGTCCTTCACACATCTGTGCACTACAGAACTCAACAATGACAATCAGCTGCACTTTTACATACCCGACTCCTGGATATCAGATCGTAAAAGTGTTTTGGATC
>TCONS_00001273
ATAGATTTGATGCTGATGTGGCTCAGAAtggctcctgctcttcatctgatCTTTCTGCTCATCATTCACAGGGTTTCTGCTGCTGGTTGGGGTGTGAATTACAGTCCTTCACACATCTGTGCACTACAGAACTCAACAATGACAATCAGCTGCACTTTTACATACCCGACTCCTGGATATCAGATCGTAAAAGTGTTTTGGATCAAAGACCTTGTAAATGATGATAAGTATCCAGATCTGTCTGTGGACCCTGAATACAGTCAGAGGCTTCAGTATCTGGGAGATAAACAGCAGATCTGCACCGTCAGACTGAGTCATGTGACAAAGAAAGATGAAGGCCTTTATTATTTCAGATTCATTACTAATGTAACAGGAGGAATGTGGACTGGCACTCCAGGAGTGGGCCTCTCTGTCACAGatcTTCAGCTGGAGTCTCCTGAGAGAGTGACAGAGAGAGATTCAGTCCGTCTGACATGTAACAGCAGCTGTAAACTGACTGACACACCAACATTCATCTGGTACAGAAACTCACACACATTGACTGAGAGAAGCAGTGAACTCCTGCTGCAGTCAGTCAGAAGACAAGATGCAGGCAGATATAGATGTGCTGTAGAtggacacacactcacatcacCTGAGGTCTATCTCAATGTCACCTATCCTCCAAAGAGCATCTTAGTGTCCATCAGTGGATCTGCTGTAATAATgtctggagattcagtgactctgagctgcagcagtgactcaaaccctcctgcagaaatcagctggtttaaaggaaaaaaatatctaaattctGGAAGAATCTTCAGAATCCCCAAGATCAGCTCTGatgacagtggagaatacaagtgTAGAGCCAGAAATGAACATGGAGTGAAATACTCTGATCCTGTGACTTTAGATGTTCAGTacCCACCCAGGAACATCTCAGTGTCCATCAGTGGATCTGCTGTAATAATgtctggagattcagtgactctgaactgcagcagcgactcaaaccctcctgcagaAATCAGCTGGTTTAAAGGAGAAACATCTGTAGGATCTGGAAGAATCTTCAGCATCTCCAAGATCAGCTCTGatgacagtggagaatacaaCTGTAGTGCCAGCAATAAACATGGAGAGAAATACTCTGATCCTGTGACTTTAGATGTTCAGTaCCCACCAAGGAGAGCCTCAGTATCTATAAATCCATCTGCTGTAATAATgtctggagattcagtgactctgagctgcagcagtgactcaaaccctcctgctctGAACTTCAGCTGGTATAAAGGAGACACATCTGTAGGATCTGGAAGACTCTACAGCATCTCCAAGATCAGCTCTGGtgacagtggagaatacaagtgTAGAGCCAGGAATGACCATGGAGAGAAATACTCTGATCCTGTGACTTTGAGCATCCAGTGGGCTGGGAGAAACATCATCATCACAGCGACCTCAGGaggaatattaataatcatcatcttcatcatcataatTCTGTGTATAATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000034910

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003250 False 1900 lncRNA 0.38 1 56873097 56874996
TCONS_00001273 True 1512 mRNA 0.44 7 56873359 56878634

Neighbor

gene id symbol gene type direction distance location
XLOC_000787 NA coding upstream 15632 56851035 ~ 56857465 (+)
XLOC_000786 si:ch211-152f2.1 coding upstream 27621 56843411 ~ 56845476 (+)
XLOC_000785 BX927068.1 coding upstream 39095 56830798 ~ 56834002 (+)
XLOC_000784 si:ch211-1f22.5 coding upstream 45215 56823437 ~ 56827882 (+)
XLOC_000782 si:dkey-27j5.6 coding upstream 56402 56813845 ~ 56816695 (+)
XLOC_000789 NA coding downstream 832 56879466 ~ 57016780 (+)
XLOC_000790 si:ch211-1f22.8 coding downstream 7580 56886214 ~ 56893355 (+)
XLOC_000791 si:ch211-152f2.3 coding downstream 21946 56900580 ~ 56904810 (+)
XLOC_000792 si:ch211-1f22.9 coding downstream 41108 56919742 ~ 56922160 (+)
XLOC_000793 si:ch211-152f2.4 coding downstream 51239 56929873 ~ 56932578 (+)
XLOC_000781 NA non-coding upstream 65495 56806134 ~ 56807602 (+)
XLOC_000776 NA non-coding upstream 189463 56669158 ~ 56683634 (+)
XLOC_000775 NA non-coding upstream 210446 56660197 ~ 56662651 (+)
XLOC_000794 NA non-coding downstream 60713 56939347 ~ 56944389 (+)
XLOC_000801 NA non-coding downstream 237631 57116265 ~ 57120505 (+)
XLOC_000809 NA non-coding downstream 335659 57214293 ~ 57214954 (+)
XLOC_000815 NA non-coding downstream 530033 57408667 ~ 57436117 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location