XLOC_007884 (g3bp1)


Basic Information

Item Value
gene id XLOC_007884
gene name g3bp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 25923373 ~ 25935167 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015387
CCACACGCGCTGCTGCCAGTGTCTCAGCTAAAAGCTTCACAGCTACCGGCGCAGGAGGTGCTTCACCTAAATCACGTCAAACTCTTCCCAAAAACACATTACTGATTCCCTTTCGttGAAACCAGTTGACCAAAGAAATGGTGATGGAGAAGCCAAGTGCCCAGCTTGTCGGGCGAGAGTTTGTCCGACAGTATTACACCCTGCTGAACCAGGCTCCTGACTACCTGCACAGGTTTTATGGCAAGAACTCCTCATATGTACATGGTGGACTGGACAACAATGGAAAACCAGCAGAAGCAGTATATGGACAGTCTGAAATCCATAAGAAGGTGATGGCTCTAAGCTTCCGTGACTGTCACACTAAGATCAGACATGTCGATGCTCATGCCACCCTGAACGAGGGAGTGGTGGTTCAAGTTTTGGGGGAGTTGTCCAATAACATGCAGCCCATGAGGAAgttcatgcagacatttgttTTGGCACCTGAGGgaactgttgcaaacaagttCTACGTACACAATGATATCTTCCGGTACCAGGATGAAGTGTTTGGGGACTCTGACTCAGAACCTCCTGAGGAATCTGAGGAGGATGTGGAGGAGCTGGAGCGAGTGCACTCACCTGAGGTGGTCCAAGAGGAGTCTTCTGGGTATTACGAACAGACACCATGTGTAGAGCCTGAGGTGCCCCAGGAAGAGGTGTCTGTAACCCCAGAGCCCCAGCCTGAACCAGAAGTGGAGGTGGAGCCGGAGCCAGCAGCTGTGGAGCTGAAAGCAGAGCCCATCAGCCAGCCTGAGGTTCATGTTGAGGAAAAGACTCAGAGATCTCCCCCATCGCCCACACCTGCTGACACCGCACCCACCATGCCAGAGGACAACCGGCCATCTTCATGGGCTTCAGTCACTAGCAAGAATCTTCCACCTGGAGGAGTGGTCCCAGCCACAGGAGTCCCTCCACATGTTGTCAGAGTCCCATCAGCACAGCCACGTGTGGAGGTGAAAACAGAAACGCAGACCACAGCACAGAGACCCCAGAGAGATCAGAGACCACGTGACCAAAGACCAGGACCCTCTCCAGCTCACAGAACACCAAGGCCCGGAGTGGTACGAGAGGGTGAGAGCGGGGAGTCAGAGGTGCGACGAACAGTCCGATATCCCGACAGTCACCAGCTCTTTGTTGGAAATGTACCTCATGATGTGGATAAGAATGAGCTCAAGGAATTCTTTGAACAGTACGGAACTGTCCTTGAGCTGAGAATCAACAGTGGCGGGAAGCTGCCTAACTTTGGATTTGTGGTATTTGATGATTCTGAGCCCGTGCAGAAGATCCTCAACAATCGGCCCATTAAACTGCGAGGAGATGTCCGGCTGAACGTAGAGGAAAAGAAGACCCGCTCAGCCCGTGAAGGTGACCGACGAGACATCCGGCCCAGAGGCCCCGGGGGACCACGTGACCGGATAGGAGGGTCAAGGGGGCCGCCTACCCGTGGAGGCATGGCTCAGAAACCCAGTTTTGGAGCCGGTCGAGGCACAGGACCCAGCGAGGGCCGCTACACAGGACCACGTCAGTGATGCAGCTCCCACGTCATTCACTGCTGATGCAAGTCACCCTGGTTAACACAAGATGGCTTCCCTGTTCCCTGTCTCCATCCCTCACTCCAGGACCCGGGAGTGCGATTCTTCTTTATCTGGACTCTTCCTTTTTATTTCTGAGATTGAACTTGAATTTGTTGTAGAAAAACAAAACTACTTGAATTGGGGAAAGGAGAAACCTAGCATTTGGTTTTAGCGTTCTCTCCCTGTTTCTTAAAGGAACGTGTTTTTACTGCTTGGGCAATCCTGTGTATTGCTAGCACCCGCTTTCAGGTCAAGTGCAAGTATGGTTTTATTTGGAATTGTTGCCAAGTCAAATCATGGTTGTGTGTGAGTGACTATCTAGCATGTAAAGAATCCTGTTTGCCTTCTACTGTTGCACTTCATCAAGAATGACAACATATTTTAACAACTCCACTGTTGAGAGAACAAAATAAACTCTATGTACTATTTTGAAGCATGGGTGTGTCTTGTCTCTGGGAAGAAGGATGGATTCCCATGGTCCTGTGGAAAGTATAGCTTGATGAAGATCgctggttttgttttttgttcacagTCATGCAGAGTAAAGGAAAGAAGTTTCAGATTTGGGTGAACTTCCTTTAAGTACTTCTGGAAATTCTTGTAAACAAATtgtatttgctgtttattttgagGACGATTTTCAAGCTATTTTTAATaggtttaatgtttttattttagaagtgttcctacatatttaaaattctaTATTTTTAGTTAGTTGTGTATGCAACTTGCATTGCAATATCTAGATTTTCTCTGGGTTATATTGCAGTATTTCACAACATAACCtattaattttagattgattgcgATTTATTTTGTatgggagtgcatctgcataaaatataaacaagtgttgcccaaatatacaaatgagggagtctaacagtatacacatgcatatataaaatcaaaattaACAAAGCTgcatattaaatgtttaagtgATCAAATGCAAATGTTAAAAttgcaaacatatttattttgccCAAATGCTTaaacttaaaatgatttaaacacgAGCATTTGATAAGCTTTCATTTTATTATGGTTAAAATGAAACGACTGGTCAACTGCTATCCTTACTCTGCATTGCACATCTTGCAATTGTGACTTCTGCAGATTCACACATGGGGATATTTGGTGCTAAAGTGATCTGTTGTGCAGCCCAATGCTGAAGCAGTGATACATGGCCATAAAGTTATGGGAAATAAATGTGCTGCAGTCTGGTCATTACAAATTAGCACATTAAGAATTTAGTTTGAAGAGCGTGCACAAAGTCACTCATTTTTATTTAAGTTCTAAATAGACAGGACAGTTCAGGTTAACCTTTCTGATTGATCACTCAGTGTTTAAATGACATGACCTGTGATGTTTCACGTAACATTTCCCTGTCTATCAACAAAAATTAAATGATGGAAAAATGACTATTTTGATATACCAGTTAAGACAAATAGTGAATATGTAAGGAGTTAATCTAGGGCCATTTATACTTGCCAAATAAATTAGAGTAtagagcaaaaaagaaaaaaataaatggcataataaatctccaaaaattgcagcgaaaataatttgtaaacaaaagaacagcaaataaaatttactttctttaattaattataaagctATGtatatgcaaaacattttttatacctTTACAAAACTcgtccagtcaattgcaatgctcgTTTTTGATTAGCTTTCTAGTTGATCGTTGAGTTTGTGAAGCTGTTTTCACTTTGCGCTTCACGTTTCTGCATGGTTCACTTTGTGGCCCAGATTTGACAAGGGGGTGGAGTCAAGGCATTTACAGCAAGCATGGACCTACTGGGCTTTTAAGTTCCCTTTACTCCGCTCCCTTATCAAATCAGCAAAACGGCATtgtttttgcactgcttgatttttatttgcagttctttctTTGTTTGCAAATTTCGTTCTtatttctcaatttttttttctatgcagtttttgtttgcgAAATTCATTGTAATTTCTCAAATTAATTTTCACTTTGCAATTTTAggagatttacatttatttatttttcgctcaatactttgttttgtttgcaaaacttttattttgcaggtatatatgaatacataaattgaatacataaatacatacctGTATAACCAGAAGACCGTATGGCATTCACAACCAAGAAGATTTGAGAACCTTCAAAGTGAAGCTTTTTTTTTCGTTTATCATATAAACCGCTTTTTCAAAAGTCACTAGAACAGGTGTAAATTTCAGAATTTGCGTTTAAACTCAATCCTAATCCTCATCAATAGAGGCGGAGCAGCTTCCGTCCCTGATTCTCAACACTGGTGTCTTAAATGAGCTGCGTATGAACTTTGATAAGTATTGCTTTTGACTGTCATCAAGAACATTTTGTAACCCAGACGTCTTATGTCATCTGTGAAGCCCTGTAGACAGATTTTTATCTGAAGAACTCGGGATGTTTTTGCCAGGAATATCAGGAGGATGTGACATTTACTCCCTTCTGAAAGCCTCTTTCATTCTGTGATGTGAAGTGAAGGAGATGGACTGTAATGCCAATGTGTCATGCTAAGAAAAGGGACTGATTCAAAGTAGACTCACATAGTCTAGACTCGAAATACTACATTAACAAAAGCTGCAATACTGTAATTATGAGAATCCCAACTAGTAAAAATTGTTCACATCTTGGTACAAAAATAAAGTTGTCTGGAATTTTA
>TCONS_00015388
CGGTACCAGGATGAAGTGTTTGGGGACTCTGACTCAGAACCTCCTGAGGAATCTGAGGAGGATGTGGAGGAGCTGGAGCGAGTGCACTCACCTGAGGTGGTCCAAGAGGAGTCTTCTGGGTATTACGAACAGACACCATGTGTAGAGCCTGAGGTGCCCCAGGAAGAGGTGTCTGTAACCCCAGAGCCCCAGCCTGAACCAGAAGTGGAGGTGGAGCCGGAGCCAGCAGCTGTGGAGCTGAAAGCAGAGCCCATCAGCCAGCCTGAGGTTCATGTTGAGGAAAAGACTCAGAGATCTCCCCCATCGCCCACACCTGCTGACACCGCACCCACCATGCCAGAGGACAACCGGCCATCTTCATGGGCTTCAGTCACTAGCAAGAATCTTCCACCTGGAGGAGTGGTCCCAGCCACAGGAGTCCCTCCACATGTTGTCAGAGTCCCATCAGCACAGCCACGTGTGGAGGTGAAAACAGAAACGCAGACCACAGCACAGAGACCCCAGAGAGATCAGAGACCACGTGACCAAAGACCAGGACCCTCTCCAGCTCACAGAACACCAAGGCCCGGAGGTGTGCAAAATTCTAATGAACTGATGGTACGAGAGGGTGAGAGCGGGGAGTCAGAGGTGCGACGAACAGTCCGATATCCCGACAGTCACCAGCTCTTTGTTGGAAATGTACCTCATGATGTGGATAAGAATGAGCTCAAGGAATTCTTTGAACAGTACGGAACTGTCCTTGAGCTGAGAATCAACAGTGGCGGGAAGCTGCCTAACTTTGGATTTGTGGTATTTGATGATTCTGAGCCCGTGCAGAAGATCCTCAACAATCGGCCCATTAAACTGCGAGGAGATGTCCGGCTGAACGTAGAGGAAAAGAAGACCCGCTCAGCCCGTGAAGGTGACCGACGAGACATCCGGCCCAGAGGCCCCGGGGGACCACGTGACCGGATAGGAGGGTCAAGGGGGCCGCCTACCCGTGGAGGCATGGCTCAGAAACCCAGTTTTGGAGCCGGTCGAGGCACAGGACCCAGCGAGGGCCGCTACACAGGACCACGTCAGTGATGCAGCTCCCACGTCATTCACTGCTGATGCAAGTCACCCTGGTTAACACAAGATGGCTTCCCTGTTCCCTGTCTCCATCCCTCACTCCAGGACCCGGGAGTGCGATTCTTCTTTATCTGGACTCTTCCTTTTTATTTCTGAGATTGAACTTGAATTTGTTGTAGAAAAACAAAACTACTTGAATTGGGGAAAGGAGAAACCTAGCATTTGGTTTTAGCGTTCTCTCCCTGTTTCTTAAAGGAACGTGTTTTTACTGCTTGGGCAATCCTGTGTATTGCTAGCACCCGCTTTCAGGTCAAGTGCAAGTATGGTTTTATTTGGAATTGTTGCCAAGTCAAATCATGGTTGTGTGTGAGTGACTATCTAGCATGTAAAGAATCCT
>TCONS_00015389
CGATTTATCTGTTTCTAGTGGTACGAGAGGGTGAGAGCGGGGAGTCAGAGGTGCGACGAACAGTCCGATATCCCGACAGTCACCAGCTCTTTGTTGGAAATGTACCTCATGATGTGGATAAGAATGAGCTCAAGGAATTCTTTGAACAGTACGGAACTGTCCTTGAGCTGAGAATCAACAGTGGCGGGAAGCTGCCTAACTTTGGATTTGTGGTATTTGATGATTCTGAGCCCGTGCAGAAGATCCTCAACAATCGGCCCATTAAACTGCGAGGAGATGTCCGGCTGAACGTAGAGGAAAAGAAGACCCGCTCAGCCCGTGAAGGTGACCGACGAGACATCCGGCCCAGAGGCCCCGGGGGACCACGTGACCGGATAGGAGGGTCAAGGGGGCCGCCTACCCGTGGAGGCATGGCTCAGAAACCCAGTTTTGGAGCCGGTCGAGGCACAGGACCCAGCGAGGGCCGCTACACAGGACCACGTCAGTGATGCAGCTCCCACGTCATTCACTGCTGATGCAAGTCACCCTGGTTAACACAAGATGGCTTCCCTGTTCCCTGTCTCCATCCCTCACTCCAGGACCCGGGAGTGCGATTCTTCTTTATCTGGACTCTTCCTTTTTATTTCTGAGATTGAACTTGAATTTGTTGTAGAAAAACAAAACTACTTGAATTGGGGAAAGGAGAAACCTAGCATTTGGTTTTAGCGTTCTCTCCCTGTTTCTTAAAGGAACGTGTTTTTACTGCTTGG
>TCONS_00015390
AGAATCTTCCACCTGGAGGAGTGGTCCCAGCCACAGGAGTCCCTCCACATGTTGTCAGAGTCCCATCAGCACAGAACACCAAGGCCCGGAGTGGTACGAGAGGGTGAGAGCGGGGAGTCAGAGGTGCGACGAACAGTCCGATATCCCGACAGTCACCAGCTCTTTGTTGGAAATGTACCTCATGATGTGGATAAGAATGAGCTCAAGGAATTCTTTGAACAGTACGGAACTGTCCTTGAGCTGAGAATCAACAGTGGCGGGAAGCTGCCTAACTTTGGATTTGTGGTATTTGATGATTCTGAGCCCGTGCAGAAGATCCTCAACAATCGGCCCATTAAACTGCGAGGAGATGTCCGGCTGAACGTAGAGGAAAAGAAGACCCGCTCAGCCCGTGAAGGTGACCGACGAGACATCCGGCCCAGAGGCCCCGGGGGACCACGTGACCGGATAGGAGGGTCAAGGGGGCCGCCTACCCGTGGAGGCATGGCTCAGAAACCCAGTTTTGGAGCCGGTCGAGGCACAGGACCCAGCGAGGGCCGCTACACAGGACCACGTCAGTGATGCAGCTCCCACGTCATTCACTGCTGATGCAAGTCACCCTGGTTAACACAAGATGGCTTCCCTGTTCCCTGTCTCCATCCCTCACTCCAGGACCCGGGAGTGCGATTCTTCTTTATCTGGACTCTTCCTTTTTATTTCTGAGATTGAACTTG
>TCONS_00015391
GTGTAGAGCCTGAGGTGCCCCAGGAAGAGGTGTCTGTAACCCCAGAGCCCCAGCCTGAACCAGAAGTGGAGGTGGAGCCGGAGCCAGCAGCTGTGGAGCTGAAAGCAGAGCCCATCAGCCAGCCTGAGGTTCATGTTGAGGAAAAGACTCAGAGATCTCCCCCATCGCCCACACCTGCTGACACCGCACCCACCATGCCAGAGGACAACCGGCCATCTTCATGGGCTTCAGTCACTAGCAAGAATCTTCCACCTGGAGGAGTGGTCCCAGCCACAGCACAGAGACCCCAGAGAGATCAGAGACCACGTGACCAAAGACCAGGACCCTCTCCAGCTCACAGAACACCAAGGCCCGGAGGTGTGCAAAATTCTAATGAACTGATGGTACGAGAGGGTGAGAGCGGGGAGTCAGAGGTGCGACGAACAGTCCGATATCCCGACAGTCACCAGCTCTTTGTTGGAAATGTACCTCATGATGTGGATAAGAATGAGCTCAAGGAATTCTTTGAACAGTACGGAACTGTCCTTGAGCTGAGAATCAACAGTGGCGGGAAGCTGCCTAACTTTGGATTTGTGGTATTTGATGATTCTGAGCCCGTGCAGAAGATCCTCAACAATCGGCCCATTAAACTGCGAGGAGATGTCCGGCTGAACGTAGAGGAAAAGAAGACCCGCTCAGCCCGTGAAGGTGACCGACGAGACATCCGGCCCAGAGGCCCCGGGGGACCACGTGACCGGATAGGAGGGTCAAGGGGGCCGCCTACCCGTGGAGGCATGGCTCAGAAACCCAGTTTTGGAGCCGGTCGAGGCACAGGACCCAGCGAGGGCCGCTACACAGGACCACGTCAGTGATGCAGCTCCCACGTCATTCACTGCTGATGCAAGTCA
>TCONS_00015392
AGGgaactgttgcaaacaagttCTACGTACACAATGATATCTTCCGGTACCAGGATGAAGTGTTTGGGGACTCTGACTCAGAACCTCCTGAGGGTAAACCGCTGATATATTGTGAATCTGAGGAGGATGTGGAGGAGCTGGAGCGAGTGCACTCACCTGAGGTGGTCCAAGAGGAGTCTTCTGGGTATTACGAACAGACACCATGTGTAGAGCCTGAGGTGCCCCAGGAAGAGGTGTCTGTAACCCCAGAGCCCCAGCCTGAACCAGAAGTGGAGGTGGAGCCGGAGCCAGCAGCTGTGGAGCTGAAAGCAGAGCCCATCAGCCAGCCTGAGGTTCATGTTGAGGAAAAGACTCAGAGATCTCCCCCATCGCCCACACCTGCTGACACCGCACCCACCATGCCAGAGGACAACCGGCCATCTTCATGGGCTTCAGTCACTAGCAAGAATCTTCCACCTGGAGGAGTGGTCCC

Function

symbol description
g3bp1 Enables mRNA 3'-UTR binding activity. Predicted to act upstream of or within innate immune response. Predicted to be located in cytoplasmic stress granule. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol. Is expressed in neuromast. Orthologous to human G3BP1 (G3BP stress granule assembly factor 1).

GO:

id name namespace
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-7452 Enables mRNA 3'-UTR binding activity. Predicted to act upstream of or within innate immune response. Predicted to be located in cytoplasmic stress granule. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol. Is expressed in neuromast. Orthologous to human G3BP1 (G3BP stress granule assembly factor 1).

Ensembl:

ensembl_id ENSDARG00000017741

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015387 False 4342 mRNA 0.42 12 25923373 25935167
TCONS_00015388 False 1447 mRNA 0.53 8 25925762 25930182
TCONS_00015389 False 749 lncRNA 0.51 3 25925883 25927920
TCONS_00015390 False 713 mRNA 0.55 5 25925992 25928541
TCONS_00015391 False 887 mRNA 0.57 6 25926108 25928899
TCONS_00015392 True 472 mRNA 0.55 4 25928514 25930226

Neighbor

gene id symbol gene type direction distance location
XLOC_007883 slc25a48 coding downstream 324371 25590603 ~ 25599002 (-)
XLOC_007882 cplx2 coding downstream 346279 25534604 ~ 25577094 (-)
XLOC_007881 slc26a2 coding downstream 470870 25438015 ~ 25452503 (-)
XLOC_007879 htr4 coding downstream 614013 25133764 ~ 25309360 (-)
XLOC_007880 dre-mir-458 coding downstream 764167 25159129 ~ 25159206 (-)
XLOC_007885 sparc coding upstream 2781 25937948 ~ 25956860 (-)
XLOC_007886 atox1 coding upstream 47795 25982962 ~ 25985762 (-)
XLOC_007887 NA coding upstream 126855 26062022 ~ 26067880 (-)
XLOC_007888 mtnr1al coding upstream 140632 26075799 ~ 26094172 (-)
XLOC_007889 fat2 coding upstream 168163 26103330 ~ 26177156 (-)
XLOC_007641 CU855896.1 misc downstream 23515533 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 23515942 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 23516301 2406945 ~ 2407072 (-)
XLOC_007875 NA non-coding downstream 863826 25055971 ~ 25059547 (-)
XLOC_007873 NA non-coding downstream 921726 24997012 ~ 25001647 (-)
XLOC_007872 AL645792.3 non-coding downstream 964977 24958280 ~ 24958396 (-)
XLOC_007871 NA non-coding downstream 1045300 24859646 ~ 24878073 (-)
XLOC_007899 NA non-coding upstream 746379 26681546 ~ 26702352 (-)
XLOC_007901 BX571940.1 non-coding upstream 780025 26715192 ~ 26715595 (-)
XLOC_007902 NA non-coding upstream 841051 26776218 ~ 26796713 (-)
XLOC_007904 CT990607.1 non-coding upstream 1240559 27175726 ~ 27175841 (-)

Expression


Co-expression Network