XLOC_007885 (sparc)


Basic Information

Item Value
gene id XLOC_007885
gene name sparc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 25937948 ~ 25956860 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015393
gCTGAAACTCAAGATGAGGGTTTGGATCTTCTTCCTGTTCTGCCTCGCTGGCAAGACTCTGGCAGCTCCAACTGAAGAGGAGCCAGCTGTTGAAGAGgagCTGGAAGTGGGAATAAACCCAGTCCAGGTGGAGACCGGAGAGTTTGATGAAGCCATTGAGGTCGTGGAGGATGTTATTGCTGAGAacCCCTGCCTAAACCATCACTGCAAGAAGGGCAAAGTGTGTGAGGTAGATGACAGCAACCAGCCCATGTGTGTGTGCCAGGACCCTTTGACCTGCCCCGCTCCAATCGGAGACTTCGAGCATGTCTGCGGCACTAACAACAAGACCTACGAGTCCTCCTGCCACTTCTTTGCCACCAAATGCTCTCTGGAGGGCACCAAGAAGGGCCACAAGCTGCACATGGATTACATCGGACCCTGCAAATACATCGCTCCCTGCTTGGAGAATGAGCTGAATGAGTTCCCCCTGCGCATGAGAGACTGGCTGAAGAACGTGCTGGTGACTTTGTATGAGCGTGATGAGGACAACAACCTGCTCACCGAGAAGCAGAAACTCAGGGTGAAGAAGATTTACGAGAATGAGAAGAGGCTTCAGGCTGGTGATCACTCTCTGGACCTTTTGGCCCTGGACTTTGAAAAGAACTACAACATGTACATCTTCCCCGTTCACTGGCAGTTTGGCCAGCTTGACCAGCACCCTATTGATGGGTTCCTGTCCCACACTGAGCTGGCCCCTCTGCGTGCTCCTCTTATCCCAATGGAGCACTGCACCACCAGCTTCTTTGAGCAGTGCGATGCTGACCAAGACAAGTACATCGCTCTGGAGGAGTGGGCAAACTGCTTCGGGATCAAAGAGCAGGATGTCGACAAAGACCTTGTCATCTAAGGACGTCTTCCATTGATGCTTCCTAGTTATTATTGGGGGGAGGTGCTAACCCTTAAGTTAAAATCAAAGTAAAGGTGCTAATTGCGATTTCTAACAAGCTGCATATACCACTAAacattcaaaatgtttaaaaaagtgcACAGTTCACACTGTAGCTATATCACAACAAGTGATTAAATACTGGCCAATTTTTTACGTTAGCTGATGTCAGCCAAACAAGAGAGTTAAATATTATGAACCATGTATATTGCAAGATACACTTTTTGTTTTGGATCtacaatttcttttaaaaactcaGATTCAGGGCTTGAATTGTAAGTTTGGATGGTGgagatgtacaaaaaaaaaaaaataataaagtttccAAATAAATGTTCTTTCTGCTTGCTTTATAaacttttagttttgtttgttgcaCTCTTTGGTGGTGGAtttactttttgattttttttaaagagtcttTTAATTTGAGCCCTGAATATCTGCAGGctgatgttttttatttgcatatttttcctGTCAGAAATCAGGGCCAAATGTTGAGTGTTTttaaagctgaataataaaaggaaataatatttgaattGAAGAGGACAGAATCTCGCCGGatgagatttatttttatttttttctccctctagCATGTTCACATACATTTGCAGTATTTGCCACAATGTGAGCACTATGAATCTCtttacataaataaaagctaCTGAAATGTCCAAACCCAATCTTTGCATACATTTCTCCATTATTCTTGATGTTTTGCCCCAGGTTTATAACCACATAACCCATTTATACTTTAATGTTTGCCTTAGGTACTTTGTCAAACATGATGTTTGCAGATCATTTGTTTCATTCAGGCAGCCAAGGTCATTTTAGCACagaagcaaatataaatataaatgtaaatatataactacataaacactgtaaatgtgcaaagaaaaCAATGCTGGAGCTCTATACACTGTGGTGCTGAAAATCTGGAACACATATGTTAGTAGTTTTCTCAAGGGTGGAGTGGATGTTTACGTAATTTCCcttagcattttaaaatatatatttgagaaCCCTGTGTTTAAAGGATTATTTTAAGCCTCCAGGCCAGTGTGGCTACTTCAACTGCTGGTCGACTGAAAAGCATAAAACGctgaaaaacatcaacaaattaaataaattttctttCGAATGTTGGATAATTTCAATAGCAAGGCAATTATTATACTTTTAATGTTTGGTTTATATGCTAAAACTctaatatttcacattattagTTTATACTCTAAATCAAAAGGGTATGTTATATTGCAAACTAAAAAAATGAAAGCATGTGTTGATTGAGGAAAACTGGAAAAGAGTTACTGGTCTCAGTGGAGATGGAGTCATGGGAAAGCAGAGAGAGAGCAGGATTTACCCAGTCACCAGGCTTACCCTTCCAGCCAGACACTCACATCAGGAATCTCAAACAATGGCAGAGCTCCAGCCAGAACACTGTGCACCGTTCAGCCCATTTCAGCAGCAGGGAGGAGGAGTAAAACGCTCTTCTAAACTCCTTATTAACCCTGAAAACAGAATGCACAAAACCCACAATAAATACTAACATTATTGAACAGAAATCAATCAGAAATATCCTATTTTTGTACTTGCTTTTTGTCAAAATTATGAGACACTTCAT
>TCONS_00015394
ACAGCAAATGTCTTCTGTGTGAACTTGTGCTGCTTTCAGAAAGTTCTCTCAGAAAGTTTCACCAGCTGACTTCTCCTCTGGCTTCTCTGTAAGACGGACAGAAGgCTGAAACTCAAGATGAGGGTTTGGATCTTCTTCCTGTTCTGCCTCGCTGGCAAGACTCTGGCAGCTCCAACTGAAGAGGAGCCAGCTGTTGAAGAGgagCTGGAAGTGGGAATAAACCCAGTCCAGGTGGAGACCGGAGAGTTTGATGAAGCCATTGAGGTCGTGGAGGATGTTATTGCTGAGAacCCCTGCCTAAACCATCACTGCAAGAAGGGCAAAGTGTGTGAGGTAGATGACAGCAACCAGCCCATGTGTGTGTGCCAGGACCCTTTGACCTGCCCCGCTCCAATCGGAGACTTCGAGCATGTCTGCGGCACTAACAACAAGACCTACGAGTCCTCCTGCCACTTCTTTGCCACCAAATGCTCTCTGGAGGGCACCAAGAAGGGCCACAAGCTGCACATGGATTACATCGGACCCTGCAAATACATCGCTCCCTGCTTGGAGAATGAGCTGAATGAGTTCCCCCTGCGCATGAGAGACTGGCTGAAGAACGTGCTGGTGACTTTGTATGAGCGTGATGAGGACAACAACCTGCTCACCGAGAAGCAGAAACTCAGGGTGAAGAAGATTTACGAGAATGAGAAGAGGCTTCAGGCTGGTGATCACTCTCTGGACCTTTTGGCCCTGGACTTTGAAAAGAACTACAACATGTACATCTTCCCCGTTCACTGGCAGTTTGGCCAGCTTGACCAGCACCCTATTGATGGGTTCCTGTCCCACACTGAGCTGGCCCCTCTGCGTGCTCCTCTTATCCCAATGGAGCACTGCACCACCAGCTTCTTTGAGCAGTGCGATGCTGACCAAGACAAGTACATCGCTCTGGAGGAGTGGGCAAACTGCTTCGGGATCAAAGAGCAGGATGTCGACAAAGACCTTGTCATCTAAGGACGTCTTCCATTGATGCTTCCTAGTTATTATTGGGGGGAGGTGCTAACCCTTAAGTTAAAATCAAAGTAAAGGTGCTAATTGCGATTTCTAACAAGCTGCATATACCACTAAacattcaaaatgtttaaaaaagtgcACAGTTCACACTGTAGCTATATCACAACAAGTGATTAAATACTGGCCAATTTTTTACGTTAGCTGATGTCAGCCAAACAAGAGAGTTAAATATTATGAACCATGTATATTGCAAGATACACTTTTTGTTTTGGATCtacaatttcttttaaaaactcaGATTCAGGGCTTGAATTGTAAGTTTGGATGGTGgagatgtacaaaaaaaaaaaaataataaagtttccAAATAAATGTTCTTTCTGCTTGCTTTATAaacttttagttttgtttgttgcaCTCTTTGGTGGTGGAtttactttttgattttttttaaagagtcttTTAATTTGAGCCCTGAATATCTGCAGGctgatgttttttatttgcatatttttcctGTCAGAAATCAGGGCCAAATGTTGAGTGTTTttaaagctgaataataaaaggaaataatatttgaattGAAGAGGACAGAATCTCGCCGGatgagatttatttttatttttttctccctctagCATGTTCACATACATTTGCAGTATTTGCCACAATGTGAGCACTATGAATCTCtttacataaataaaagctaCTGAAATGTCCAAACCCAA
>TCONS_00015395
CGCTGTACAGTTGATGGGATGAGTCGGGAGTGAAGGGCTCAGATGGAGCTCCTGCTGTGTCGTTGTCTCATCGCTAAGCAGGGTGTCTCAGTCAGAAACTCGCTAAATGTGTTTCTGGCGTAAACGAATTAAGCCCTAACAGCTATTACACTAATATTAGCCAGAGGGCTGTAATTTGCCCCCTTTTAGGCTATAATACTACGGTATATGTCAGCACAGGAGGAGCACTggcatgctgtttgtgtttattatttgtttgaaatGGATTGCTTTATTGTGTGTACTTTTGTTTAGACATCGCTCCCTGCTTGGAGAATGAGCTGAATGAGTTCCCCCTGCGCATGAGAGACTGGCTGAAGAACGTGCTGGTGACTTTGTATGAGCGTGATGAGGACAACAACCTGCTCACCGAGAAGCAGAAACTCAGGGTGAAGAAGATTTACGAGAATGAGAAGAGGCTTCAGGCTGGTGATCACTCTCTGGACCTTTTGGCCCTGGACTTTGAAAAGAACTACAACATGTACATCTTCCCCGTTCACTGGCAGTTTGGCCAGCTTGACCAGCACCCTATTGATGGGTTCCTGTCCCACACTGAGCTGGCCCCTCTGCGTGCTCCTCTTATCCCAATGGAGCACTGCACCACCAGCTTCTTTGAGCAGTGCGATGCTGACCAAGACAAGTACATCGCTCTGGAGGAGTGGGCAAACTGCTTCGGGATCAAAGAGC
>TCONS_00015396
TTTCACCAGCTGACTTCTCCTCTGGCTTCTCTGTAAGACGGACAGAAGACGGTTGCTCGGGATGAAGCAGTAGTAATAACAACAGAACGGTTTAACTTACACACAGCGCTGGGGGAAGGGCTGACCACTTAGAAAGGTCAGgCTGAAACTCAAGATGAGGGTTTGGATCTTCTTCCTGTTCTGCCTCGCTGGCAAGACTCTGGCAGCTCCAACTGAAGAGGAGCCAGCTGTTGAAGAGgagCTGGAAGTGGGAATAAACCCAGTCCAGGTGGAGACCGGAGAGTTTGATGAAGCCATTGAGGTCGTGGAGGATGTTATTGCTGAGAacCCCTGCCTAAACCATCACTGCAAGAAGGGCAAAGTGTGTGAGGTAGATGACAGCAACCAGCCCATGTGTGTGTGCCAGGACCCTTTGACCTGCCCCGCTCCAATCGGAGACTTCGAGCATGTCTGCGGCACTAACAACAAGACCTACGAGTCCTCCTGCCACTTCTTTGCCACCAAATGCTCTCTGGAGGGCACCAAGAAGGGCCACAAGCTGCACATGGATTACATCGGACCCTGCAAATACATCGCTCCCTGCTTGGAGAATGAGCTGAATGAGTTCCCCCTGCGCATGAGAGACTGGCTGAAGAACGTGCTGGTGACTTTGTATGAGCGTGATGAGGACAACAACCTGCTCACCGAGAAGCAGAAACTCAGGGTGAAGAAGATTTACGAGAATGAGAAGAGGCTTCAGGCTGGTGATCACTCTCTGGACCTTTTGGCCCTGGACTTTGAAAAGAACTACAACATGTACATCTTCCCCGTTCACTGGCAGTTTGGCCAGCTTGACCAGCACCCTATTGATGGGTATGCTGTCtca
>TCONS_00015397
CTTGATCTGTTACGGTATTGATCTCAAGCCACAGCTGGACTGATACCACAGGAGTATATAGGGTTGAAagcaatgCTGAAACTCAAGATGAGGGTTTGGATCTTCTTCCTGTTCTGCCTCGCTGGCAAGACTCTGGCAGCTCCAACTGAAGAGGAGCCAGCTGTTGAAGAGgagCTGGAAGTGGGAATAAACCCAGTCCAGGTGGAGACCGGAGAGTTTGATGAAGCCATTGAGGTCGTGGAGGATGTTATTGCTGAGAacCCCTGCCTAAACCATCACTGCAAGAAGGGCAAAGTGTGTGAGGTAGATGACAGCAACCAGCCCATGTGTGTGTGCCAGGACCCTTTGACCTGCCCCGCTCCAATCGGAGACTTCGAGCATGTCTGCGGCACTAACAACAAGACCTACGAGTCCTCCTGCCACTTCTTTGCCACCAAATGCTCTCTGGAGGGCACCAAGAAGGGCCACAAGCTGCACATGGATTACATCGGACCCTGCAAATACATCGCTCCCTGCTTGGAGAATGAGCTGAATGAGTTCCCCC
>TCONS_00015398
aggCTGAAACTCAAGATGAGGGTTTGGATCTTCTTCCTGTTCTGCCTCGCTGGCAAGACTCTGGCAGCTCCAACTGAAGAGGAGCCAGCTGTTGAAGAGgagCTGGAAGTGGGAATAAACCCAGTCCAGGTGGAGACCGGAGAGTTTGATGAAGCCATTGAGGTCGTGGAGGATGTTATTGCTGAGAacCCCTGCCTAAACCATCACTGCAAGAAGGGCAAAGTGTGTGAGGTAGATGACAGCAACCAGCCCATGTGTGTGTGCCAGGACCCTTTGACCTGCCCCGCTCCAATCGGAGACTTCGAGCATGTCTGCGGCACTAACAACAAGACCTACGAGTCCTCCTGCCACTTCTTTGCCACCAAATGCTCTCTGGAGGGCACCAAGAAGGGCCACAAGCTGCACATGGATTACATCGGACCCTGCAAATGTGAGCACATACCTGTGGAAAAAGAAGTGGGAAATGTTCAAACTATACACTAAAAAAACCCCAACAGTAaacagtaaaacccaacagtcaactttaccaaatgaaatgagtgtggtTAACTCACAATtgaattgactgaaagttaattctactcatttaaaaagagatttgaactcagtgttgaaggtaatgagttaattaaatacctcattacttcaacttaaatggagttcacagtactcatttagattagttttttttttaactcaaatggtttatagcaatttttcctcaaacagtttgagttgcctttacttgagttttacagtactcagttggtttgagttctcttcatttattgagttttactgtgctcaaattgcttcgtttactcaaatggattaag
>TCONS_00015399
TCAGAAAGTTTCACCAGCTGACTTCTCCTCTGGCTTCTCTGTAAGACGGACAGAAGACGGTTGCTCGGGATGAAGCAGTAGTAATAACAACAGAACGGTTTAACTTACACACAGCGCTGGGGGAAGGGCTGACCACTTAGAAAGGTCAGGTACTGCCACTGTGTAACATtattgcgcctgctgcagccattATGTACCAAGTTCCTTGTTCCTTgCTGAAACTCAAGATGAGGGTTTGGATCTTCTTCCTGTTCTGCCTCGCTGGCAAGACTCTGGCAGCTCCAACTGAAGAGGAGCCAGCTGTTGAAGAGgagCTGGAAGTGGGAATAAACCCAGTCCAGGTGGAGACCGGAGAGTTTGATGAAGCCATTGAGGTCGTGGAGGATGTTATTGCTGAGAacCCCTGCCTAAACCATCACTGCAAGAAGGGCAAAGTGTGTGAGGTAGATGACAGCAACCAGCCCATGTGTGTGTGCCAGGACCCTTTGACCTGCCCCGCTCCAATCGGAGACTTCGAGCA

Function

symbol description
sparc Predicted to enable calcium ion binding activity; collagen binding activity; and extracellular matrix binding activity. Acts upstream of or within several processes, including erythrocyte differentiation; inner ear morphogenesis; and pharyngeal system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including cranium; hematopoietic system; pectoral fin; pectoral fin bud; and vestibuloauditory system. Human ortholog(s) of this gene implicated in cervix carcinoma; endometrial carcinoma; and osteogenesis imperfecta type 17. Orthologous to human SPARC (secreted protein acidic and cysteine rich).

GO:

id name namespace
GO:0048752 semicircular canal morphogenesis biological_process
GO:0051216 cartilage development biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0032474 otolith morphogenesis biological_process
GO:0060037 pharyngeal system development biological_process
GO:0030916 otic vesicle formation biological_process
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005518 collagen binding molecular_function
GO:0050840 extracellular matrix binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-030131-9 Predicted to enable calcium ion binding activity; collagen binding activity; and extracellular matrix binding activity. Acts upstream of or within several processes, including erythrocyte differentiation; inner ear morphogenesis; and pharyngeal system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including cranium; hematopoietic system; pectoral fin; pectoral fin bud; and vestibuloauditory system. Human ortholog(s) of this gene implicated in cervix carcinoma; endometrial carcinoma; and osteogenesis imperfecta type 17. Orthologous to human SPARC (secreted protein acidic and cysteine rich).

Ensembl:

ensembl_id ENSDARG00000019353

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015393 False 2567 mRNA 0.40 9 25937948 25949713
TCONS_00015394 False 1724 mRNA 0.44 10 25938895 25956860
TCONS_00015395 False 726 lncRNA 0.49 3 25941217 25943014
TCONS_00015396 False 865 mRNA 0.52 9 25941443 25956804
TCONS_00015397 False 544 mRNA 0.52 7 25942679 25949951
TCONS_00015398 False 836 lncRNA 0.43 5 25943986 25949715
TCONS_00015399 True 520 mRNA 0.51 7 25944740 25956812

Neighbor

gene id symbol gene type direction distance location
XLOC_007884 g3bp1 coding downstream 2781 25923373 ~ 25935167 (-)
XLOC_007883 slc25a48 coding downstream 338946 25590603 ~ 25599002 (-)
XLOC_007882 cplx2 coding downstream 360854 25534604 ~ 25577094 (-)
XLOC_007881 slc26a2 coding downstream 485445 25438015 ~ 25452503 (-)
XLOC_007879 htr4 coding downstream 628588 25133764 ~ 25309360 (-)
XLOC_007886 atox1 coding upstream 26102 25982962 ~ 25985762 (-)
XLOC_007887 NA coding upstream 105162 26062022 ~ 26067880 (-)
XLOC_007888 mtnr1al coding upstream 118939 26075799 ~ 26094172 (-)
XLOC_007889 fat2 coding upstream 146470 26103330 ~ 26177156 (-)
XLOC_007890 emx3 coding upstream 406677 26363537 ~ 26377044 (-)
XLOC_007641 CU855896.1 misc downstream 23530108 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 23530517 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 23530876 2406945 ~ 2407072 (-)
XLOC_007880 dre-mir-458 non-coding downstream 778742 25159129 ~ 25159206 (-)
XLOC_007875 NA non-coding downstream 878401 25055971 ~ 25059547 (-)
XLOC_007873 NA non-coding downstream 936301 24997012 ~ 25001647 (-)
XLOC_007872 AL645792.3 non-coding downstream 979552 24958280 ~ 24958396 (-)
XLOC_007871 NA non-coding downstream 1059875 24859646 ~ 24878073 (-)
XLOC_007899 NA non-coding upstream 724686 26681546 ~ 26702352 (-)
XLOC_007901 BX571940.1 non-coding upstream 758332 26715192 ~ 26715595 (-)
XLOC_007902 NA non-coding upstream 819358 26776218 ~ 26796713 (-)
XLOC_007904 CT990607.1 non-coding upstream 1218866 27175726 ~ 27175841 (-)

Expression


Co-expression Network