XLOC_007886 (atox1)


Basic Information

Item Value
gene id XLOC_007886
gene name atox1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 25982962 ~ 25985762 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015400
AAAGGAAACAGTGCGTCACCTGACCGTCCAGCAACAGTGCCAGCAAAATCGAGTCTGTAGACTTGAGTTTGCAGCAACAGTCTGATCGATCATGACGACTCACGAGTTTTTTGTTGACATGACATGTGAAGGATGCTCTGGTGCAGTCACTCGAGTACTTAATAAACTGGATGTCAAGTTTGATATCGATCTTCCCAACAAGAAGGTCTTCATTGAGTCAGACAAAAACACTGATGTCCTTCTGGAAACACTAAAAAAGACTGGAAAAACTGTTACCTACATTGGTACAAAATGAAAAggtttatattaaaacaataagGTCAGAATCATGCTGCTTTGGAGATTATAAAATGGGACTCCTTCAATGGCCTGTACATTACATATCTGATCAATTGCTATGTATCTGCGGGACCACAAAAGGAAATTTGTTCAGCAGAACCACAAACAACTACCAGgctttgcttttttctttttaaaaatgttctgtttacaATTATAAGAATCTTGATTAAAGCCAATCCGTTAACAGTGTGGTCTTTTTCCTGCCACACTTGTCTACATGTAATTGTATGTGTCCAGATGTTTAAATAAAGATTCCTGTATTTACTCAGAG
>TCONS_00015401
GAGTTTGCAGCAACAGTCTGATCGATCATGACGACTCACGAGTTTTTTGTTGACATGACATGTGAAGGATGCTCTGGTGCAGTCACTCGAGTACTTAATAAACTGGATGTCAAGTTTGATATCGATCTTCCCAACAAGAAGGTCTTCATTGAGTCAGACAAAAACACTGATGTCCTTCTGGAAACACTAAAAAAGACTGGAAAAACTGTTACCTACATTGGTACAAAATGAAAAggtttatattaaaacaataaggTGAGAACTCAATTCAAATACTTCAGTCAATTGCACTCACAGAAGTTAAAAATCATTATAACACATTAACTGAACTA

Function

symbol description
atox1 Predicted to enable copper chaperone activity. Predicted to be involved in cellular copper ion homeostasis and response to oxidative stress. Predicted to act upstream of or within metal ion transport. Predicted to be active in cytosol. Orthologous to human ATOX1 (antioxidant 1 copper chaperone).

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0030001 metal ion transport biological_process
GO:0006878 cellular copper ion homeostasis biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016531 copper chaperone activity molecular_function

KEGG:

id description
ko04978 Mineral absorption

ZFIN:

id description
ZDB-GENE-120720-2 Predicted to enable copper chaperone activity. Predicted to be involved in cellular copper ion homeostasis and response to oxidative stress. Predicted to act upstream of or within metal ion transport. Predicted to be active in cytosol. Orthologous to human ATOX1 (antioxidant 1 copper chaperone).

Ensembl:

ensembl_id ENSDARG00000087693

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015400 False 613 mRNA 0.38 4 25982962 25985762
TCONS_00015401 True 332 mRNA 0.36 3 25984998 25985698

Neighbor

gene id symbol gene type direction distance location
XLOC_007885 sparc coding downstream 26102 25937948 ~ 25956860 (-)
XLOC_007884 g3bp1 coding downstream 47795 25923373 ~ 25935167 (-)
XLOC_007883 slc25a48 coding downstream 383960 25590603 ~ 25599002 (-)
XLOC_007882 cplx2 coding downstream 405868 25534604 ~ 25577094 (-)
XLOC_007881 slc26a2 coding downstream 530459 25438015 ~ 25452503 (-)
XLOC_007887 NA coding upstream 76260 26062022 ~ 26067880 (-)
XLOC_007888 mtnr1al coding upstream 90037 26075799 ~ 26094172 (-)
XLOC_007889 fat2 coding upstream 117568 26103330 ~ 26177156 (-)
XLOC_007890 emx3 coding upstream 377775 26363537 ~ 26377044 (-)
XLOC_007891 b4galt7 coding upstream 393722 26379484 ~ 26392475 (-)
XLOC_007641 CU855896.1 misc downstream 23575122 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 23575531 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 23575890 2406945 ~ 2407072 (-)
XLOC_007880 dre-mir-458 non-coding downstream 823756 25159129 ~ 25159206 (-)
XLOC_007875 NA non-coding downstream 923415 25055971 ~ 25059547 (-)
XLOC_007873 NA non-coding downstream 981315 24997012 ~ 25001647 (-)
XLOC_007872 AL645792.3 non-coding downstream 1024566 24958280 ~ 24958396 (-)
XLOC_007871 NA non-coding downstream 1104889 24859646 ~ 24878073 (-)
XLOC_007899 NA non-coding upstream 695784 26681546 ~ 26702352 (-)
XLOC_007901 BX571940.1 non-coding upstream 729430 26715192 ~ 26715595 (-)
XLOC_007902 NA non-coding upstream 790456 26776218 ~ 26796713 (-)
XLOC_007904 CT990607.1 non-coding upstream 1189964 27175726 ~ 27175841 (-)

Expression


Co-expression Network