XLOC_007887


Basic Information

Item Value
gene id XLOC_007887
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 26062022 ~ 26067880 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016399
CTGTTATAAACATCAAAGCAGGATATCTGTTCTTTAATTCAACCACAGAGCACTTTCCAGCTGTCAAGGCCTGCACTAGAAATTAGAAAGATACAATGGGGAAACTCAACCAGTGGACCAGTGAAACTCATGTTCAACATCTACAACTATAAAGTGATGTATCTCCCCTTTTAGAGTTACAGTCTTACattatttcacttattttaagGTTATACAGTAAAGATACcttcttttttaacattttgagaGCAGTTAAATACTTAGAGCATATGTACAATAAGGCAAAATTCAAGAAACAACAAATACTAAACAAACAATACTGCAATTACAGCAGCTGTATGTGATTGACATTCAACATAATACAGTGTATACTACCGGTAAAATGTTTGGGTCCAGGAAGAAGTTTTAAAacaagcttatcctgctcaccaaggctacatttatttaatcaaaaatatagaacacattgtaaaattgtgaaatgttttggcactataaaataactgttcaaaagcagtttatcatttatttaataatttattctagtgattttaaagatgatgtctccagatccttcagaaatcactcaaatattaacaataataattattaaaaataattttcttaaaaacatgaaaaaactgaccccaaacttttaaacttttaattggtagtatatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatacatactgtatatatacaaacaACTTTCCAGTCAATAACTTTGGCACAACCTTAAATTTACAGTTTACAGCAAAATTGTATTAGGCAAAGTGGAAAGAATTTATGAAAAAATGTTCAAGTAGCATCAACAATATAACATAAGTGTTAAGCATTACAATCGCTTGagtaaaggcatagttcaccaaaTATGATTTTCCCCccatatttactcacccttaagtgacTTGAAACCACATCAgtttctttaattaaaacaaaagatgatgttttgaagaaagctgaaaacctgtaaccattgacttccacagtaagaatacatgtattaaggacattttttttgtttttaacacaagAAATAAACTCAAGTTTAAAGGGTGAGTactgtaaataatgacagaatttaaatttttgggtgaacttttcctTTGATATGACAAAAACTCTCACTCCAGTTGGTCTGAAGTGTCTTTAAATGTAATGCTAATCTTACGACAAGACTCACATCTGAGTGATTTTCTTTAATAACTTTGTGATCTGGATTAATTATTTtctgactttctttttttctgcccAAATAACAGTCATGTTGTATGTTGTATGACCAAAAAAAGTCCAGGACAGGTCAGATTGTACAATGTTCATGAAACTGATACCTTTATGAATTAACAattcattcttaaaaaaaaaaaaaaaaaaggaaaatgtacaTGTATATGTGTTTAACCCAACACTATCAGGATAAAAAGGTAAAACAATCTTAAATTATCAACTAATTTCTTTGCAAAACAAGTTGATTAATGATGGCATCTTTTGAATATTCTCCTGAAAATAGGATTATTTGATAAGTGAGATtatgaatgattataaaaaaatcaattattacAAAGGGAAAGGAAGAACACATTTGTTTCAACAGCACTGATCTCGCTTGAGACTGAGCAGTACCAGCAGTACCATTATTAACTTGTGCTAATATACAGTAAACCATTCTGCACACCAAGTGGATTTTCCACATATTTACAATTAAGTCTAGGTGGAGTCGAAGTCTAATATGCAAATGCAACTGTCTTTTGGtcttaaaaaacaaaagccctaTGAACACTAATACACAAAATACAAGCAGAAATCTCTGTTTGAGTCACTTCTTTTCCATTCTAACTTGTGAAAACACTcatgagtaggcccacatggaatctgcgcgtgcagaaacCCGCAGGTTTCATCAGATTTTTGGCCCATcaatgagtctatttatttagttgtgtgtaaatttaaatttattcagtttttttttttattaatttcagtgatattactgaataatatgaaaacgtttatatgatttacttacaatacagattgtaaagtaataatttctgtcttttagtagatatatggtagacatattatatgagagatttgctttgtttaccaaataatttGATCTAATAGGATTTGAatagtaaacaataaataaaggttaaaaatatattaatttttaacatattaaatttttagttacgatactcccaaaatcatttcacacaaatctgcagatttttcacaatattctgtgcagaaatagcaaaagatGCCCGCTGAcactgtctggccctactcatgagAGAAGCACATGaacctgaaaataaaaaaaaaccttcggCCGacaatacactgtaaacaaaatattaaaataaaccacAAAAAGATTAACTCATAAATCTTGATATGACGAGACTTCAGTGCTGCAAACCTCATAAAAAATCCATGAACCATCAAGAGACGTCCAGTAGGAAAAATCCCAAGCGGACTCCAGCAGAAATCAAAGGAGCATGTAGTGAGTAAATGATTCAGCGGGTCTCTGTATGGCCTACATTTACTCTGTGGCTTCGGCAACACTCACAGGACTGTACTGTTGTGTCTGTCACCATTTCGGGCCACAATCTCCTGGATGGAGGTGTATGTTCCTGCTATGAAGCCCACAAAGCCGAGGACGCTGATGAGAATGTCCTTGGCAAACACCCAGGGCTTCATGTCTTCATTGTGGAAGGTGATGATCTGGAGCAGAGGAGGAATGATGAGGGCCAGAGCGCTGCTGCTCACAGAGCCCACCAGAGAGATCACCAGGTCCAGCTCCGGAATTAATATGGCCAGAGCACCTGCAGACAGAACACACAGGTGGACTGGATGATGGTAAGATGAGATCTCTGTGTGGAGCGCTGGCTGCTGTCAGACGTCTTGTTCAGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016399 True 3036 lncRNA 0.34 2 26062022 26067880

Neighbor

gene id symbol gene type direction distance location
XLOC_007886 atox1 coding downstream 76260 25982962 ~ 25985762 (-)
XLOC_007885 sparc coding downstream 105162 25937948 ~ 25956860 (-)
XLOC_007884 g3bp1 coding downstream 126855 25923373 ~ 25935167 (-)
XLOC_007883 slc25a48 coding downstream 463020 25590603 ~ 25599002 (-)
XLOC_007882 cplx2 coding downstream 484928 25534604 ~ 25577094 (-)
XLOC_007888 mtnr1al coding upstream 7919 26075799 ~ 26094172 (-)
XLOC_007889 fat2 coding upstream 35450 26103330 ~ 26177156 (-)
XLOC_007890 emx3 coding upstream 295657 26363537 ~ 26377044 (-)
XLOC_007891 b4galt7 coding upstream 311604 26379484 ~ 26392475 (-)
XLOC_007892 pimr212 coding upstream 327434 26395314 ~ 26400501 (-)
XLOC_007641 CU855896.1 misc downstream 23654182 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 23654591 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 23654950 2406945 ~ 2407072 (-)
XLOC_007880 dre-mir-458 non-coding downstream 902816 25159129 ~ 25159206 (-)
XLOC_007875 NA non-coding downstream 1002475 25055971 ~ 25059547 (-)
XLOC_007873 NA non-coding downstream 1060375 24997012 ~ 25001647 (-)
XLOC_007872 AL645792.3 non-coding downstream 1103626 24958280 ~ 24958396 (-)
XLOC_007871 NA non-coding downstream 1183949 24859646 ~ 24878073 (-)
XLOC_007899 NA non-coding upstream 613666 26681546 ~ 26702352 (-)
XLOC_007901 BX571940.1 non-coding upstream 647312 26715192 ~ 26715595 (-)
XLOC_007902 NA non-coding upstream 708338 26776218 ~ 26796713 (-)
XLOC_007904 CT990607.1 non-coding upstream 1107846 27175726 ~ 27175841 (-)
XLOC_007905 NA non-coding upstream 1254339 27322219 ~ 27339439 (-)

Expression


Co-expression Network