Fish Transcriptome and Expression Database

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ornamental fish

trnaf-gaa_17

Basic Information

Item	Value
gene id	trnaf-gaa_17
gene name	NA
gene type	coding
species	mexican tetra (Astyanax mexicanus)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NW_019171211.1
NCBI id	APWO02000809.1
chromosome length	16929
location	1117 ~ 1188 (-)
genome version	Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnaf-gaa_17
GCCGAAATAGCTCAGTTGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGTTTCGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
trnaf-gaa_17	True	72	tRNA	0.53	1	1117	1188

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
trnaf-gaa_16	NA	coding	downstream	26	1020 ~ 1091 (-)
trnaq-cug_21	NA	coding	downstream	198	848 ~ 919 (-)
trnaf-gaa_15	NA	coding	downstream	899	146 ~ 218 (-)
trnaf-gaa_14	NA	coding	downstream	997	49 ~ 120 (-)
trnaf-gaa_18	NA	coding	upstream	26	1214 ~ 1285 (-)
trnaf-gaa_19	NA	coding	upstream	123	1311 ~ 1383 (-)
trnaf-gaa_20	NA	coding	upstream	221	1409 ~ 1481 (-)
trnaq-uug_7	NA	coding	upstream	793	1981 ~ 2052 (-)
trnaf-gaa_21	NA	coding	upstream	965	2153 ~ 2224 (-)

Expression

Co-expression Network