CI01000016_00251025_00251471 (GBP)


Basic Information

Item Value
gene id CI01000016_00251025_00251471
gene name GBP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 250218 ~ 251486 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_00251025_00251471.mRNA
AGAGATATATTCAAAATGCCTTGTCGAAAGGAGAATTATATCTTTTTGGAACAGTCGGTAACGGTGGATTCTAAGGAAGTAGACGCTCTCGTGTCGAAAATCGGCGAGGCGCTGCAGCTTCACAACAATAGCTCGAGCCAGAAGGCGATGTCACGTCTACACGGTCTCACCAGCAGCAAACCGAACGGCAGCAGCAGCGCGGCGGGCGGTCAGCGGTGCATCCGTCTCCGCAGCCGGAGTTTACGTACCAGCCGGGCCAGTCCGTATAACCCGCCCGGATCCAGCGATCAGGAATGGGACCATTTCAAATCCTCGTGGAACCGAAAGAAAATCGACGAAGACGATCCACACCAGCTCCTCCAGGAACTCATATTGTCGGGGAATCTGATCAAAGAAGCGGTCAGACGACTCCAGTTTTCATCGGAACCACCGGAGAACGACATCTCCAAACCTGTAGACTGAGTTCTCTAGCCCGCAGATGCATGAACGACTTGACGTTTTCAAATTTTGGGGCCCCCAGCTCGTTGTCATACGTTGGTTTTACAAACTTTGATATCACACCCTTATAATTTTTCTATTGTATATTGATGAGATGGAAATGTTATGTATTTTGGACTGTTTTGCAACGTGACCCTTCTTATTGAGTAATTTTTAAGTTGTTTATCTCAGTGTTTGGATTGAAATGCAAATGTGATGCAAAAATCTAGTGGTTTATAGCAATGCATTTTATAATAAGTATTAACCGGCCTCTGGTTGGTTTGTCCTAGAATGGTGCATCTTGTTTTGGTTTGCTGGAGTTCAGCACTGTGTGTCAGTAGCAACCAAGAACTGCCTAACTGCTTTGTTTACAGTGTAGATGTGGTCTGGCTGCTGATTTGCAGTCCTCGCCTAGATCAGGCAACGGGTCACACTTTTTGTTTACTCATCAAACTATATTTGGATACCGAGATATCACTATTTTGATTTCAAACTGGCCCTGTGTGCACTTCATGAGGGCCCATGTCCTCTGTCCCTTTCCATGTGAGGAGCAAGGCCAACACTCCTTCTCAAAGAGACACTGAGATCAAACTCACATGCGTGTGGGGAAGTGTTATACATGGAGGATGTGATCACAACACAGACACTGTGGTGCTTTTTGATTCCAATGTGGAGTTCTCATGTTTTTTTCCTTTATTTTTTTTGTTCTCACTCTGTGTAAACTAAGCATATGCTTCGCAACGAAGTGTTTTTATTAACTCTGATTGTTCAGAGAATTTGGTGTCTAATAAA

Function

symbol description
gbp Predicted to enable kinase activity. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Is expressed in gill. Orthologous to several human genes including FRAT1 (FRAT regulator of WNT signaling pathway 1).

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
K03096 FRAT2; frequently rearranged in advanced T-cell lymphomas 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_00251025_00251471.mRNA True 1269 mRNA 0.45 1 250218 251486

Neighbor

gene id symbol gene type direction distance location
CI01000016_00166492_00172759 SERINC2L coding downstream 77459 166085 ~ 172759 (-)
CI01000016_00153934_00154312 NA coding downstream 94596 153908 ~ 155622 (-)
CI01000016_00099623_00100245 NA coding downstream 149973 98834 ~ 100245 (-)
CI01000016_00079894_00094596 HIVEP3 coding downstream 155622 78944 ~ 94596 (-)
CI01000016_00068703_00072323 NA coding downstream 177137 68658 ~ 73081 (-)
CI01000016_00448107_00452861 CCNE2 coding upstream 196372 447858 ~ 452861 (-)
CI01000016_00456765_00460615 TP53INP1 coding upstream 203342 454828 ~ 461209 (-)
CI01000016_00471859_00490955 NAGPA coding upstream 219297 470783 ~ 490955 (-)
CI01000016_00513504_00514565 NA coding upstream 260638 512124 ~ 514744 (-)
CI01000016_00581946_00586945 NA coding upstream 330380 581866 ~ 586997 (-)
G93835 NA non-coding downstream 47272 199158 ~ 202946 (-)
G93829 NA non-coding downstream 60880 188604 ~ 189338 (-)
G93801 NA non-coding downstream 99253 62817 ~ 150965 (-)
G93802 NA non-coding downstream 111344 132552 ~ 138874 (-)
G93805 NA non-coding downstream 190623 59358 ~ 59595 (-)
G93873 NA non-coding upstream 29508 280994 ~ 281211 (-)
G93934 NA non-coding upstream 149007 400493 ~ 401772 (-)
G93954 NA non-coding upstream 257585 509071 ~ 509303 (-)
G93988 NA non-coding upstream 322814 574300 ~ 576181 (-)
G93992 NA non-coding upstream 327731 579217 ~ 579783 (-)
G94786 NA other upstream 2019350 2270836 ~ 2276275 (-)
G95070 NA other upstream 2733774 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 3384121 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 3614275 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 4661222 4918975 ~ 4922518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010164 gbp coding NC_007127.7 CM002900.2 40954481 ~ 40955839 (+)
grasscarp (Ctenopharyngodon idella) G149522 NA non-coding CI01000028 null 6916043 ~ 6916282 (-)
rainbow trout (Oncorhynchus mykiss) G131279 LOC106605477 non-coding NC_048566.1 CM023220.2 30557566 ~ 30572768 (+)
tiger barb (Puntius tetrazona) G115020 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 non-coding NC_056714.1 CM032083.1 21167994 ~ 21169353 (+)