CI01000016_00589778_00591095 (METTL6)


Basic Information

Item Value
gene id CI01000016_00589778_00591095
gene name METTL6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 589672 ~ 591294 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_00589778_00591095.mRNA
ATTTAGCTCGCTAAATGTATCGGTAGTTAAAGTACATGTAATTATTTGAAACTAGCTAACTTTGTGTGTGTTTTTTACTGAGATGGCTGCCTGTAACTTTTTTATTAACGTGCTGTGACTTTTATGATATAACTTCACGGCATCAGATTTTAAGTCGTTGCCTCAGTTTTAATAATAAAGATCAGGAGCTCAAACAATCATGTCAGTGACAGGTGAGTTAGACTCGCTCGAATCCCCCCATCAGTCCACTGATCTGAGTGAAAGGACACTGACACCAGAAGAGATCGAGAAACTCAGAAATGACCGGGTTTTAGTGTCAGACTTCAAGCAGCAGAAACTCGAATCGGATGCTCAGAAAAACTGGGACTTATTTTATAAAAGAAACACGACGAACTTTTTCAAAGACAGACACTGGACCACCAGAGAGTTTGATGAATTGAAAAACTGCAGAGAATCTGAAGGAGAGAAGCTGGTGTTGTTGGAGGCTGGCTGTGGGGTTGGAAACTGCATTTTCCCCCTTCTAGAAGAGGATCTCAATGTCTTCATCTATGCCTGTGACTTCTCTCCACGAGCTGTTGAGTTTGTGAAGCAAAATTCCTTGTATTGCACCGAGCGATGCCTTGCGTTTCAGTGTGACCTCACTAAGGATGATCTTCAGGCTACCATACAAGTAGAAACAGTGGATGTAGCCACATTGATATTTGTTTTGTCTGCAATTCATCCTGAAAAGATGCAGAAAGCCCTGGAACAGATTTTTAAGGTATTAAGACCAGGAGGTATTGTCCTCTTCAGGGACTATGGACTGTATGATCATGCCATGTTGAGGTTTAAGTCAGGCAATAAGCTGGGGGAGAATTTCTATGTAAGACAGGACGGGACCCGTTCCTTTTTCTTCTCAAGAGAGCACTTGGCTGGTTTGTTCCAACAGGCAGGATTTGAGACTCTTGTGAACGAGTATGTGTTGAGAGAAACTGTGAATAAAAAAGAGGGTCTGTGTGTTCCCCGAGTGTTCCTGCAGAGTAAATTTCGCAAACCCGTTCCCTCATAATGACCAGCATAAATTAGCCATATTTTTGTAAAAAATTTTCCAAAGTCTTGTGTATTAATTTATTGACTGTCTGCATGTTTTTTTTACTATCTCATAATGAAATAAA

Function

symbol description
mettl6 Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Orthologous to human METTL6 (methyltransferase 6, methylcytidine).

GO: NA

KEGG:

id description
K00599 METTL6; tRNA N(3)-methylcytidine methyltransferase METTL6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_00589778_00591095.mRNA True 1154 mRNA 0.41 5 589672 591294

Neighbor

gene id symbol gene type direction distance location
CI01000016_00581946_00586945 NA coding downstream 2675 581866 ~ 586997 (-)
CI01000016_00513504_00514565 NA coding downstream 74928 512124 ~ 514744 (-)
CI01000016_00471859_00490955 NAGPA coding downstream 98717 470783 ~ 490955 (-)
CI01000016_00456765_00460615 TP53INP1 coding downstream 128463 454828 ~ 461209 (-)
CI01000016_00448107_00452861 CCNE2 coding downstream 136811 447858 ~ 452861 (-)
CI01000016_00592794_00596916 NA coding upstream 836 592130 ~ 597102 (-)
CI01000016_00601605_00607255 RSPO3 coding upstream 9328 600622 ~ 607255 (-)
CI01000016_00679328_00729780 NA coding upstream 87498 678792 ~ 729966 (-)
CI01000016_00754785_00770356 NA coding upstream 163389 754683 ~ 770356 (-)
CI01000016_00775184_00778097 HINT3 coding upstream 183364 774658 ~ 778097 (-)
G93992 NA non-coding downstream 9889 579217 ~ 579783 (-)
G93988 NA non-coding downstream 13491 574300 ~ 576181 (-)
G93954 NA non-coding downstream 80369 509071 ~ 509303 (-)
G93934 NA non-coding downstream 187900 400493 ~ 401772 (-)
G93873 NA non-coding downstream 308461 280994 ~ 281211 (-)
G94011 NA non-coding upstream 44873 636167 ~ 636370 (-)
G94017 NA non-coding upstream 53379 644673 ~ 644880 (-)
G94073 NA non-coding upstream 154378 745672 ~ 745975 (-)
G94106 NA non-coding upstream 206190 797484 ~ 797719 (-)
G94786 NA other upstream 1679542 2270836 ~ 2276275 (-)
G95070 NA other upstream 2393966 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 3044313 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 3274467 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 4321414 4918975 ~ 4922518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010156 mettl6 coding NC_007127.7 CM002900.2 40340222 ~ 40345372 (+)