XLOC_007899


Basic Information

Item Value
gene id XLOC_007899
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 26681546 ~ 26702352 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016051
GTAAATGGTAAGGTAACAGCAAATTAACCAATTTTAATCTTTAAtcgttttttactttatttttcttatCACAACGCGCAAAATGTAATTATACCCAGACCATTCTCCATTAAATTTTTGATACAATTAATATGCAAAAATTTTAAATGAgtctaaaaattattaaaaattaaaaaaaaaaaatcaagctgcagACTAggcgtcatcatcatcatcatcattatcattattattattattattattactctagGCGCGCTGTGTGTGGATAAGTTGATTCTGAAGGGGTTCAGGTTAAATCCTCTATTTGGGAGTTCCGCATGAGGTCCAGCCAAGGCTCTTGTATCTGCACGTGTCGGGGATAGAGAAGTATAATAGCGCGTGCTGAAAGCCTCAGGGAAGGGCGCATGCCAGCTGAAACGAGAAAAGGGGGCACAGACATCACGTTTATCACCCTCTCAAGAAGTTCATTTTACAGCACATCAAACATCCAAGGGCTGAAAGGCTGTATCAGTGCAGAAGGGCTCTCTCAGGTCACAGGTCACTCAAGGGCAGAAGACCCCTCACCTCCCAAGGAGACGGCCTCCCATGTCAACGAGCACAAAAACATCAAAACAGCCTTCATGTTTGTACAGCCATTTGCACACAGCTACATCGCAGCCCTTCAGAGACAAGGCTGCGGGGGCCATCATGCCCTGGGAGCGTGCTTGACACGGATGCATCTCCAAGTGGCTGTGAAGTAGAGGGCAGCAGGTTACAAGTGCTGCAGACTGTGTTAAGTGAGTCTGATGAGACTGGAGAGCCTATAGAGGAGGAGCAGCTCCTGCCAGCGACGCCACGCACCGTCACCTGCGTCTCACCTGCCCCCACTAGATCTGCCTTTAGGCCCAGGAGGGACAACCCGATGCcactccaacccacggccgacaGGAAAGTGTCAATCAAAAGGGAAGCCATGCAGCTGCGCGAATGCAAACTTTGATTCCGAGCTAAATAGATGGCTTTTTCACCCCACTCCCACTGCTGGAGCAGCTCCTCCGAGACTGCAGATAAAAATCAGGGAAATTCAATCCAAGCCACAGCTTTGGATAAACAGATGTGATTTTTTCTACAGCTGATAACCTCTTTCCCCCGTCTGACCCTGCACCTGCAGCAAGACTGATGCCTTGCTCTGCTCTCTCTTGACCTCCAATCGCTGATAACCATCCAATTAATCAATTTAGTGCCAACTACTGGCTATTTTGGCTGTATCACTTGACAGTTGTGAGTGATGCAATATTAAGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016051 True 1285 lncRNA 0.46 3 26681546 26702352

Neighbor

gene id symbol gene type direction distance location
XLOC_007898 tgfbi coding downstream 145042 26511041 ~ 26536504 (-)
XLOC_007897 smad5 coding downstream 183221 26467120 ~ 26498325 (-)
XLOC_007896 syvn1 coding downstream 215817 26452740 ~ 26465729 (-)
XLOC_007895 pld7 coding downstream 244595 26426085 ~ 26436951 (-)
XLOC_007894 lman2 coding downstream 256130 26413417 ~ 26425416 (-)
XLOC_007900 neurog1 coding upstream 979 26703331 ~ 26704829 (-)
XLOC_007901 BX571940.1 coding upstream 12840 26715192 ~ 26715595 (-)
XLOC_007902 NA coding upstream 73866 26776218 ~ 26796713 (-)
XLOC_007903 pcdh11 coding upstream 292762 26995114 ~ 27297123 (-)
XLOC_007904 CT990607.1 coding upstream 473374 27175726 ~ 27175841 (-)
XLOC_007641 CU855896.1 misc downstream 24273706 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 24274115 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 24274474 2406945 ~ 2407072 (-)
XLOC_007887 NA non-coding downstream 613666 26062022 ~ 26067880 (-)
XLOC_007880 dre-mir-458 non-coding downstream 1522340 25159129 ~ 25159206 (-)
XLOC_007875 NA non-coding downstream 1621999 25055971 ~ 25059547 (-)
XLOC_007873 NA non-coding downstream 1679899 24997012 ~ 25001647 (-)
XLOC_007872 AL645792.3 non-coding downstream 1723150 24958280 ~ 24958396 (-)
XLOC_007905 NA non-coding upstream 619867 27322219 ~ 27339439 (-)
XLOC_007906 CR854833.1 non-coding upstream 854134 27556486 ~ 27556622 (-)

Expression


Co-expression Network