CI01000016_01835869_01947822 (TSNARE1)


Basic Information

Item Value
gene id CI01000016_01835869_01947822
gene name TSNARE1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1835745 ~ 1947842 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_01835869_01947822.mRNA
TGATTTGGGCTTAAGTGAGGATGTGTGGGTTGCATTATATCCTGCCAGACTTCTTGGCAGATTTACAGGTCCAAACCCAGGTACCTGTCGTCAGGGTGTACCACATCTGCCAATTACATCAAACAACATTGCCACTGAAAGCTTTAGGCTACAATCTGTCTAAGAGTTGGTGGTCCTGGCACTGTCCTAGATCCGGGCTTGAGGTTGACATGCATTGCATATGCAGACGGTGTCACATGATTATAAGCAAGGAGCAGATGGTACAGAGTCATGTGATGTTGTTAGCCGGGCTTGAATCTGAGAGGTTCTCCTGCATCTGGTATTACTCCAATTTGGCTGCTCAAGAAATTATCGGAGGACCCAGAATGTCGTACGGATCCATTGACGCAGGCTCTTTTGGAAGCAGAAATCCATTTGGTGGGCCCACAAGGCAGGGATACCAGCCACACACCGAAAAAAAGGCTCTTGTCATGAGACGACCGTCTGAGCAGAGCCCAGCACATGTGGTTAGCCAGTGTCTGGATGAGGCTTCAACCTCTGCTGTGTTCATTAGGGAGCCCACCCCATATGGAGGGATAGTGCTCAATGCAGAGTGGAATGAATATGGAACATCCATCTATCACCGTGATGGAGGAGAGAGTATGAGAGCTACACAAGTCAGCCCCTCAGAGCTGCAAGATGTGTTCCAGGAAACCTCCTCTAACATCTTTCAGATCAATGCTAACGTGGTAACACTAGAGAAGAACCTTCAATCGTTGGGCACATCCAGAGACACAGCAGAGCTACGGCAGAGTTTGATGGTGTCCGTCAACATGACTGATCCAGTATGCGTCATTACCCCAGGTCGGGATCGGTGCTTAATGGCACGTTACGATGGAATAATTGTTTTCTGCTCATTAGCCTTACATCTCCTCTGCTCACAAGACAGGCTCCGTCTGACGAGACTCAAAACAGAGCTATCGGATTCTGTGCAGCGATATGGAGACCTGCAGAAGAAAATTGCAGATCGTTCGAGGGCCTTGCTTCCTTCTGCACAAAAGGACAGGAAACAGGTGAGTGGGCTTCAATATCTCAGAGTCCAGAGAGAGTCCACTTCTTCCTCTTTGTTCTTTCATGAGCTCTTCGACATCCCTGTGACAATGAGAAAACCTCCCAACTACAAGCCGCTCTTTGACCTAATAGACAATGATATCCTCAGTGAGTGGGACGACAACAACCGCGCAAAGCAGAGGAGCCTACAGACTCCATTCAGTGAACTGGTTGAAGAGGGGCCGTTGTTCGGAGCGGGGGAGACCATTGAGGGTGATGGCCAAGCATTCCTGTCAGAGATCAGTGAGGAAGATGTGGAGATCCTGAGGCAAAGAGAAGAAGCACTGCTGCAGATTGAGAGAGACATGCTGGACGTTAATCAGATTATGAAGGACTTGGCCAGCATGGTGCATGAACAAGGAGACACCATAGACAGCATCGAAGATTACATTCAGACCACCTCATCACATGTGGAATCAGCCAATCAGGAGCTTGCAAAAGCCAGCCATTATCAGGTTTCTCCACCTCATTGACTTCCCCAGTTGGCCTTATTGAAATCATTTCAATCAAATCAATCAAATCAAAGTTTATTTATAGAGCGCTTTATAAAAACAACAAGTGTTTACCAAAGTGCTGTACAAGCATAATCAGAATAAA

Function

symbol description
tsnare1 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in endomembrane system. Predicted to be integral component of membrane. Orthologous to human TSNARE1 (t-SNARE domain containing 1).

GO:

id name namespace
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K13814 TSNARE1; t-SNARE domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_01835869_01947822.mRNA False 1686 mRNA 0.47 17 1835745 1947842

Neighbor

gene id symbol gene type direction distance location
CI01000016_01689633_01693021 NA coding downstream 142073 1689495 ~ 1693672 (-)
CI01000016_01659416_01671969 NA coding downstream 163776 1658974 ~ 1671969 (-)
CI01000016_01653014_01654553 NA coding downstream 181186 1652387 ~ 1654559 (-)
CI01000016_01577710_01581289 NA coding downstream 254066 1576406 ~ 1581679 (-)
CI01000016_01476991_01494147 NA coding downstream 340751 1476837 ~ 1494994 (-)
CI01000016_02120276_02136906 NA coding upstream 172314 2120156 ~ 2137185 (-)
CI01000016_02263634_02265929 MRAP2, MRAP2A coding upstream 315403 2263245 ~ 2265929 (-)
CI01000016_02288848_02311105 PLEKHO1B coding upstream 339455 2287297 ~ 2311105 (-)
CI01000016_02328065_02334778 NA coding upstream 379970 2327812 ~ 2335736 (-)
CI01000016_02467451_02477544 NA coding upstream 519609 2467451 ~ 2477544 (-)
G94510 NA non-coding downstream 98172 1733079 ~ 1737573 (-)
G94449 NA non-coding downstream 211743 1623032 ~ 1624002 (-)
G94434 NA non-coding downstream 267463 1568055 ~ 1568282 (-)
G94433 NA non-coding downstream 270094 1565320 ~ 1565651 (-)
G94364 NA non-coding downstream 271834 1563089 ~ 1563911 (-)
G94634 NA non-coding upstream 124622 2072464 ~ 2078409 (-)
G94674 NA non-coding upstream 202521 2150363 ~ 2150589 (-)
G94748 NA non-coding upstream 232412 2180254 ~ 2180460 (-)
G94751 NA non-coding upstream 249423 2197265 ~ 2197495 (-)
G94768 NA non-coding upstream 294381 2242223 ~ 2249672 (-)
G94786 NA other upstream 322994 2270836 ~ 2276275 (-)
G95070 NA other upstream 1037418 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 1687765 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 1917919 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 2964866 4918975 ~ 4922518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010895 si:ch211-208k15.1 coding NC_007127.7 CM002900.2 37166572 ~ 37470042 (-)