XLOC_000790 (si:ch211-1f22.8)


Basic Information

Item Value
gene id XLOC_000790
gene name si:ch211-1f22.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56886214 ~ 56893355 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001274
GATAGATTTGATGCTGATGTGGCTCAGAAtggctcctgctcttcatctgatCTTTCTGCTCATCATTCACAGGTTTTTTGCTGCTAATTGTGATGTGACATATAGTACTTTGTACATCTGTGCACTACAGAACTCAACAATGACAATCATCTGTAATTATACATACCCTGATGGATTGAAGGTCATGAAAGCCTTCTGGAACATAGACCAAGTATATTATGAAGGAGACTTTGCAGATCTGTCTACAAACTCTGAATACAGTCAGAGGCTTCAATATCTGGGAGATAAACAGGAGAACTGCACCGTCAGACTGAGTCATGTGACAAAGAAAGATGAACATGTGTATTATTTCAGATTTGTTACTAATGTAGAAGGACAAAAATGGATTGGCATTCCAGGAGTGCGTCTCTCTGTCACAGatcTTCAGCTGGAGTCTCCTGAGAGAGTGACAGAGGGAGATTCAGTCCGTCTGACATGTAAAAGCAGCTGTAAACTGACTGACACACCAACATTCATCTGGTACAGAAACTCACACATATTGACTAATATTGGAGATGAACTCAACATCAGGTCAGTCAGTAGAAGAGAAGCAGGACACTACAGCTGTGGTGTGCAGGGACAAACGTACATCTCTCCTGCTGTTTATCTCAATGTCACATATGCTCCAGATACTCCTGTGATCTCCATCAGTGGATCTGCTGTAATAATGGAGGGggattcagtgactctgagctgcagcagcgactcaaaccctcctgcacAAATCAGCTGGTTTAAAGGAGAAACATCTGTAGGATCTGGAAGAATCTTCAACATCTCCAAGATCAGCTCTGatgacagtggagaatacaagtgTAGTGCCAGAAATGACCATGGAGAGAAAATCTCTGATCCTGTGACTTTAGATGTCCAGT
>TCONS_00001275
ATGTGGCTCAGAAtggctcctgctcttcatctgatCTTTCTGCTCATCATTCACAGGTTTTTTGCTGCTAATTGTGATGTGACATATAGTACTTTGTACATCTGTGCACTACAGAACTCAACAATGACAATCATCTGTAATTATACATACCCTGATGGATTGAAGGTCATGAAAGCCTTCTGGAACATAGACCAAGTATATTATGAAGGAGACTTTGCAGATCTGTCTACAAACTCTGAATACAGTCAGAGGCTTCAATATCTGGGAGATAAACAGGAGAACTGCACCGTCAGACTGAGTCATGTGACAAAGAAAGATGAACATGTGTATTATTTCAGATTTGTTACTAATGTAGAAGGACAAAAATGGATTGGCATTCCAGGAGTGCGTCTCTCTGTCACAGatcTTCAGCTGGAGTCTCCTGAGAGAGTGACAGAGGGAGATTCAGTCCGTCTGACATGTAAAAGCAGCTGTAAACTGACTGACACACCAACATTCATCTGGTACAGAAACTCACACATATTGACTAATATTGGAGATGAACTCAACATCAGGTCAGTCAGTAGAAGAGAAGCAGGACACTACAGCTGTGGTGTGCAGGGACAAACGTACATCTCTCCTGCTGTTTATCTCAATGTCACATATGCTCCAGATACTCCTGTGATCTCCATCAGTGGATCTGCTGTAATAATGGAGGGggattcagtgactctgagctgcagcagcgactcaaaccctcctgcacAAATCAGCTGGTTTAAAGGAGAAACATCTGTAGGATCTGGAAGAATCTTCAACATCTCCAAGATCAGCTCTGatgacagtggagaatacaagtgTAGTGCCAGAAATGACCATGGAGAGAAAATCTCTGATCCTGTGACTTTAGATGTCCAGTATCCTCCCAGGAACGTCTCGGTGTTCGTCACTGATTCTGGTCAGCTTTTTTCTGATTCAGTGAGTCTGATGTGCATcagtgactcaaaccctcctgctctGAGCTTCAGCTGGTTTAAGGAGAATCAAAGCTCAGCTGTTGGATCTGGACAGAGTTTCAGTGCAGTACAGAGTGGACGCTTCTACTGTGAGGCTCACAATCCACATGGAGCTCAGAGATCAGACGCCGTCACTGTCACTGGTGAAGCTTTTATCATCACACTCCTagacatttttctttcctCTGTCCAGACATATGCAGGTCTGGATCTCCAGACTGTGACCTCTAACCTGTACGACACACTCACAGTAAGTGAAAGTCAAAGTCAGACAATGTTCACTTATGATCAGATGATTGATGATCTCTCGCTGTCTTTCACACAGACCGTTCACCACAGACCTGCTGAAAACTCCTGCTCCACTCTTGATCCTCAGAGCTCTTCTGAACATCACAATCCACCAGTAAGAGACAATATCAGCCATAAACCCTCTCAGCAGCAGTTTGATTATTGGATGAGCCTCTTCAAAGGCcgtatttacactgcagatcttcatggtcaattccgattttgtgaccatttaaatttatttattttttttttatga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096507

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001274 False 914 mRNA 0.43 4 56886214 56891758
TCONS_00001275 True 1542 mRNA 0.43 6 56886230 56893355

Neighbor

gene id symbol gene type direction distance location
XLOC_000788 NA coding upstream 7580 56873097 ~ 56878634 (+)
XLOC_000787 NA coding upstream 28749 56851035 ~ 56857465 (+)
XLOC_000786 si:ch211-152f2.1 coding upstream 40738 56843411 ~ 56845476 (+)
XLOC_000785 BX927068.1 coding upstream 52212 56830798 ~ 56834002 (+)
XLOC_000784 si:ch211-1f22.5 coding upstream 58332 56823437 ~ 56827882 (+)
XLOC_000791 si:ch211-152f2.3 coding downstream 7225 56900580 ~ 56904810 (+)
XLOC_000792 si:ch211-1f22.9 coding downstream 26387 56919742 ~ 56922160 (+)
XLOC_000793 si:ch211-152f2.4 coding downstream 36518 56929873 ~ 56932578 (+)
XLOC_000794 NA coding downstream 45992 56939347 ~ 56944389 (+)
XLOC_000795 si:ch211-1f22.10 coding downstream 61994 56955349 ~ 56960001 (+)
XLOC_000781 NA non-coding upstream 78612 56806134 ~ 56807602 (+)
XLOC_000776 NA non-coding upstream 202580 56669158 ~ 56683634 (+)
XLOC_000801 NA non-coding downstream 222910 57116265 ~ 57120505 (+)
XLOC_000809 NA non-coding downstream 320938 57214293 ~ 57214954 (+)
XLOC_000815 NA non-coding downstream 515312 57408667 ~ 57436117 (+)
XLOC_000816 NA non-coding downstream 525993 57419348 ~ 57433416 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G335612 NA non-coding NW_019172925.1 APWO02000034.1 5163797 ~ 5166114 (-)