CI01000016_02741163_02753993 (STK40)



Basic Information


Item Value
gene id CI01000016_02741163_02753993
gene name STK40
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2741163 ~ 2754053 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000016_02741163_02753993.mRNA
ATTCTGACCCTGGAAGAACGTGGGGACACGGCTGGAGAGACACAAGAAGAAAGGCAAGGCAAAATGCTCCTGCATACAGAGTATTCTTTACTGTCACTGCTCTCCAACCAAGAAGGAGTGGTACACCATCACGGCCTCTTCCAGCTTAATGGTGTGGTTATGTATCCGTTTTCTTTGTTAGACACTGTTAAATGCACTGCTGGGTTGGCCGAGGACCGTTCCTGTGAGATTGTCGAGGACATGGAGGCCAACAAAGTGCGGAAGATGAAGAGACGAATCTGTCTGGTGCTCGACTGCCTCTGTGCCCACGACTTCAGCGACAAGACTGCCGACCTCATCAACCTGCAGCATTATGTCATCAAAGAGAAGCGATTGAGCGAGCGCGAGGCCATCGTTATCTTCTATGATGTAGTGAGAGTAGTGGAGGCGTTACATAAGAAGAACATCGTGCATAGAGACTTGAAGCTTGGAAACATGGTGCTTAATAAACGGCTGAAGAGGGAGGGGAGGGAGCAGTGGGAATCTATCCCAGTTAAAACGAACAGGCATGGAACGTGCCCCTGGTTCATTCCCTGGAAAAAAGGAGAGGGTGATGGAGCCAGGGAAGGGGGGACCCATCGGATCACCATCACAAACTTTTGCCTTGGCAAGCATTTGGTGAGTGAGGAAGATCTGTTAAAGGACCAGCGAGGCAGTCCAGCCTACATCAGCCCAGATGTCCTAAGTGGTCGGCCATACCGCGGTAAACCCAGTGATATGTGGGCGCTCGGTGTGGTGCTGTTCACCATGCTCTATGGCCAGTTCCCGTTCTATGACAGTATACCTCAAGAGCTCTTCCGCAAGATCAAAGCAGCAGAGTACTCCATCCCTGAGGATGGGCGGGTATCAGAAAGTACGGTGTGTTTGATCAGGAAGCTTCTGGTGCTCGACCCCCAGCAGAGACTCACTGCCACCGAGGTGCTCGAGTCTCTGAGCGCCATCATTGCATCCTGGCAATCTGTGTCCTCGCTGAGTGGCCCTCTACAAGTGGTGCCAGACATAGACGATCAGCTTAACCACCCCGAACATCTTCAGGAGGCGAAAGTAACAGAAGAGTCGTCTCAGTACGAATTTGAGAACTACATGAGGCAACAGCTCTTGTTGGCAGAAGAGAAGAACACTATCCACGAGACCAAGAACTTCCTCAGCAAGAGGCATTTCGGTAACGTCCCTCCGAAGGCAGCAGAAAGCTCAAGGCTACCATTTCCTGTGCATTCGCCCAATCGTAAACAGAAATGTATATTTAATCATGTGATATGCCACTGCAACGGACTCTCGAAAGCTGAGCTGGGTGGTACTATCATGGATTTTGATTTCAGCTGCAGCTCAGGGATCGAGGATTGGCCGCTAGGGAACGTTTTTGGCCACAGTGATACAAAGAAACCCGTTGCATAGGGGACAGTTTTGTTTTTTAATTTTATTCCCTCACCTATCCCTCATTTCCATGTATGGTTA

Function


symbol description
stk40 Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm and nucleus. Is expressed in axis; hindbrain neural plate; mesoderm; optic primordium; and optic vesicle. Orthologous to human STK40 (serine/threonine kinase 40).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K16312 STK40, SHIK; serine/threonine-protein kinase 40

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000016_02741163_02753993.mRNA True 1494 mRNA 0.50 12 2741163 2754053
Loading

Neighbor


gene id symbol gene type direction distance location
CI01000016_02722831_02730864 OSCP1B, OSCP1 coding upstream 9585 2722831 ~ 2731578 (+)
CI01000016_02719966_02722011 MRPS15, PL8L1 coding upstream 18972 2719966 ~ 2722191 (+)
CI01000016_02714495_02719654 NA coding upstream 21417 2714412 ~ 2719746 (+)
CI01000016_02662862_02676190 CAPN7, CAN7 coding upstream 64865 2661658 ~ 2676298 (+)
CI01000016_02576551_02588698 PIK3R4 coding upstream 152043 2576551 ~ 2589120 (+)
CI01000016_02793868_02796984 EVA1BA coding downstream 39815 2793868 ~ 2797333 (+)
CI01000016_02876373_02882129 NA coding downstream 122134 2876187 ~ 2882148 (+)
CI01000016_02918064_02918435 NA coding downstream 163711 2917764 ~ 2918540 (+)
CI01000016_02965137_02979305 SCMH1 coding downstream 211084 2965137 ~ 2979509 (+)
CI01000016_03050072_03055313 CTPS1A, CTPS1, CTPS1B coding downstream 294489 3048542 ~ 3055370 (+)
G94901 NA non-coding upstream 6918 2733748 ~ 2734245 (+)
G94898 NA non-coding upstream 49152 2691683 ~ 2692011 (+)
G94874 NA non-coding upstream 196158 2544751 ~ 2545005 (+)
G94850 NA non-coding upstream 232272 2508643 ~ 2508891 (+)
G94848 NA non-coding upstream 237721 2503127 ~ 2503442 (+)
G94904 NA non-coding downstream 58290 2812343 ~ 2812551 (+)
G94905 NA non-coding downstream 62036 2816089 ~ 2816299 (+)
G94858 NA non-coding downstream 63334 2817387 ~ 2822216 (+)
G94906 NA non-coding downstream 76687 2830740 ~ 2832069 (+)
G94908 NA non-coding downstream 81339 2835392 ~ 2835705 (+)
G93406 NA other upstream 1813631 905400 ~ 927532 (+)
G95439 NA other downstream 1108122 3862175 ~ 3862305 (+)
G95648 NA other downstream 1518583 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 2080505 4829592 ~ 4837457 (+)
G95792 NA other downstream 2465827 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 2651816 5405791 ~ 5407963 (+)

Expression


CI01000016_02741163_02753993(STK40) Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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CI01000016_02741163_02753993(STK40) Expression in each Bioproject

Bar chart with 44 bars.
CI01000016_02741163_02753993(STK40) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location