CI01000016_02817855_02829699


Basic Information

Item Value
gene id CI01000016_02817855_02829699
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2817855 ~ 2830457 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_02817855_02829699.mRNA
AGGATTACAAAACACGTTGGAAATCATGCCAAATAGTGCAGAAAATGAATTTGAATAAATTTAGAGTAATTTCCAAGACATTTCCAAAACCGAAGTTATGGCCGGACGGTCGCACCACATGATATTTTGACACTTTAAGTAACAGAAAATTACAAATTACAGTAAAAATGAGTACATGCACGGGCGAGGTACTACATATATATGGTATCTTTTTATGCATTTAAACCAAATTTTAACTGGAAAAAAAAATGCAACTGGACAGAAAATTTAGGCGTCACATCATTGACCCTTATATGGACCACGTTTATGCTGCTTTTGTGCCCTTTTTGAAGATTAAATGCCTCCATTCATTGTAATAACAGTGAAAAGTGCAACCAGTACAATTCAGATGTCTGCTTTTGTATTTCTCAGAAGAAAGAAAATAATATGGGTTTGAAACAGCATTAGAGTGACTAAATAATTATAGAATTTTCATTTAAACTTCAGTTAAACTAGTGGATAAATAGCTTTTCAAATGAGGGAGCTGTTGTAATTGTTACCTTCAGTTAGAGTCTACTGTCTGTGCAGAGCTAATGTGTTGTAACTGGCAGGCTGAGAACCTCCTCTTTGCTTCGTAGAAACAGAGTAGAAATCTTTCCCATATGACCCATGTGACTGACTCTTTCCATCCGCGCTCACTTGAGGAGATGCAAAGTCCCTCTTGCTCACTGTGAGAGTATCATGTTGCTCTGTGCACTACCTTCTTACTCTGTATTCCAATGAAAAAACGCACCAGCTCTAGGTCTCGCTCTCGGTCAAGATCCCATTCCCCGCCCCACAACCGTGAACGGAACCACACACGGGAGTACCAGAACCAACGGGAGTTTCGAGGCAACCACAGAGGCTTCCGGAGGCCATATTACTTCCGGGGCAGAGGTCAGGGCTTTTTCCGTGGACGCTTTCAGCGTGGTGGAAGGGGTGGATATAATAATAACTACCGTCACAAAAACTGGCAAAATTTCCGGCAGTACCCTCAGCAGCAACAGAAGCAGTACCACTCCAACAGCCCCAAGAGGGGCCGTTCACGCTCTCCCAAGAAGCAGTTGAGCAGCCCGCAGTCCCGCAGCCATTCCCGCCGCTCTGACAGGTCATCCTCAGGGAGATCGCCACAGTCGCACCATTCTTCCTCTTCCACCTCTGGGTCTGCCAAACGCAGTTGCAAAGATGTAAGAGAGGACGTCTCAGTGCCCGAAGAAATTCAAGGAGGGGGAGATGGGGCTCTGGCAGAGCAGGTGGGAGGTTCTTCTTTGGCCGAAGGGAATGCTGATGGAGACAGGACTTTGGAGAGCTCTCAGGTTTTGACAAACAGTGACACTAGTCCTAAAAGGACAAGTCCAAAGGTTTGCTCCTCTGTCACTAATGATGAACCGATTGACTCTGCAACCAACGAGACAAGTCCTGCTCATAAGAATTCAAATGCTCCGAATAAAGGTGCCACCACCTGGCAGAATGTTACAACTGCACCTTCAAACAACAGCCCCATAAAGAAAAGCCTTAGCCCAGTTTTCAATGGTTTTGGGCTCTTTACAAATATTGACCAACAAACAGAGGATACAGTTTCTATCTCCGCTGCATTTTTGAATCAGTATAAGAGTGGAAGTAACACAATAACTCCTGTGTGCGTGCCAGACAAAAAATTCCTGGAGGAGCAAAACGTTAAAAAACAGGCCTCTGCATGGGAGAACAACACACACAAAAGGAAAAGTAACGGAGAATTAGTATGTGATAAAGAAAATGGAGGAGTCATTGAAAAGGGCATTGAGTTGTCTCCCACTGTAGATCATGACAATGCAGGAGAGAAGGAGAAATGCAAATCTGCAAAGAGTGGTGATGGTAACAAGTTATCCATAAGCACCCCTAAAATGGGTCCACGAAACGGCCCAACATTTCTGTGCGAGGATGGTGAGGACGATGATGAAGAAAGGGAGATCTCTGATAGGGTGAGGGATATGGAAAACAATCCCTCCAAAAGCAAAAGCAAAGTCACGCTGTCCGCTCAAGAAATGTTCGAGAAGCGAATCAGGAGGATGCAGGACATGGCATGGGATGATGAGCTGGAAGCTCTCCTGCTCTGTCATAAACAGGAAAGAGCAGCGAATATCTTAGCTGCTCTCTCTAAGAGAGACCAGCTGAGTAGCATGCTTAAGGATCCCTCCCCTGAAAAGCTCTCAAATGTGAAGCGAAAGGAGAAAACTGCACTAAGTTCCTTATCTAAACCCACACTGCTGCCCAGGAGAAGTTCTGAAAGCCGTGAGCAAGAGATGTTTGTGGTTATGAACGAGGAATCCCCACCAAGAGCTTCCATGAAAAGAGGAAGTGAATTCGGTGTAAGGATGGATTCTCTCAGTGATGACCTCGCAAGAACATCTGTTTTGACCAACGAAAGAAGGAATCTTCTGGATTTTGTGCATCTTGATAAAAAGGACTGGGAGTTTCAATCTGTCCTTCAGCATCTTCAGGCTCAGCAAACACCTAGAAGCCCATCTGAGCTGTTTGCCCAACACATAGTCTCAATTGTCCATCACATTAAAGCTCAATATTTTCCTTCTTCTGGATTGACCCTAAATGACCGCTTTGCCATGTACCAGAGAAGAGCTGCTGAGAAAGAATTCATTAAGCAGAGAAAGAGTCCAGAGATACACAGGAGAATTGATGTTTCTCCCAGTGCTTTTAAGAGGCACTCTCTTCTGTTTGATGAGATGAAAAGCACCATGGAAAACAGCTTCAAGGTCGATGGTAAAAAATCTAAAGGTGATTCAATGGACCTTCGGCTGGATATTGAGCGCAGAAAGAAATACTCGAGTGGAGAGAGAGAGCACAGAGAGGAAGAGTACGGAGGAAGAGTATCGGGGGAACCTCCCGAATCAAGAAAGGAAACATCCACAGAGAAAACCTCAAAGAACCACAAAAAAACAAAGAAAAGCAAGAAGAAACGGGAGCGTTCTCAGTCATCTTCCTCATCTTCCTCTGTTTGCCATGAAGAAGAGGCTGAGATCAAGCCAGAAGGCTTATCCAGAGACCAGATGGGGTTTAGGGAGTATGGAGAGCCTGCGGAGAGAGGAAGGGCACGAGGAGGCTTTCAGCTTAGCATCCGTGGTAGAAGTTGGAACCGAGGAAATTTCCATGGAAACAGCAACGGTGATTCACAGATGAACATGTCAGCAAAGAATGAAGACTGGGTTCAAGAATACACTCCCAAGAGCAAGAAATACTTCCTACACAGTGAAAGAGATGGTGAAGGTGAGAGAAAGCTGATGAACACACGGGGATGTGGCCGCGGTAATATTGTTCGCACAAGGGGACGTTTCATCCTCCGGAGGGCAACAAATACCAACACCACCAATAATACGAGTCCTAAATGGGCCCATGATAAATTCCAGGCCACTGATGATGAGGGCGAACAGCAAGGAGATGATGTAGAACAGGACCAAAACAAAGATCATAATTTAATGACTTATATGAATGACCCAGTCTCTCTATGGGACCAAACTACAGCAG

Function

NR:

description
LOC570454 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_02817855_02829699.mRNA True 3537 mRNA 0.45 12 2817855 2830457

Neighbor

gene id symbol gene type direction distance location
CI01000016_02802780_02815803 NA coding downstream 2052 2802599 ~ 2815803 (-)
CI01000016_02679833_02695963 SH3BP5B, SH3BP5 coding downstream 121892 2678538 ~ 2695963 (-)
CI01000016_02589744_02622875 NA coding downstream 194980 2589475 ~ 2622875 (-)
CI01000016_02568824_02575674 DECR1 coding downstream 242181 2568610 ~ 2575674 (-)
CI01000016_02467451_02477544 NA coding downstream 340311 2467451 ~ 2477544 (-)
CI01000016_02884294_02912568 MAP7D1A coding upstream 52389 2882846 ~ 2912568 (-)
CI01000016_02936606_02957342 NA coding upstream 105652 2936109 ~ 2957875 (-)
CI01000016_02991852_02994428 CITED2, CITED4B coding upstream 160763 2991220 ~ 2994428 (-)
CI01000016_03060171_03060612 RAB42B coding upstream 229086 3059543 ~ 3060612 (-)
CI01000016_03062846_03063013 NA coding upstream 232389 3062846 ~ 3063272 (-)
G95154 NA non-coding downstream 41989 2775445 ~ 2775866 (-)
G95153 NA non-coding downstream 42826 2774594 ~ 2775029 (-)
G95152 NA non-coding downstream 44137 2773510 ~ 2773718 (-)
G95151 NA non-coding downstream 44352 2773258 ~ 2773503 (-)
G95150 NA non-coding downstream 45138 2772502 ~ 2772717 (-)
G95157 NA non-coding upstream 7798 2838255 ~ 2838520 (-)
G95158 NA non-coding upstream 9013 2839470 ~ 2839694 (-)
G95161 NA non-coding upstream 18222 2848679 ~ 2848903 (-)
G95166 NA non-coding upstream 34312 2864769 ~ 2865131 (-)
G95172 NA non-coding upstream 47074 2877531 ~ 2877739 (-)
G94786 NA other downstream 541580 2270836 ~ 2276275 (-)
G95070 NA other upstream 154803 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 805150 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 1035304 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 2082251 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 2495062 5325519 ~ 5332874 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010099 thrap3a coding NC_007127.7 CM002900.2 35870456 ~ 35901707 (+)
bowfin (Amia calva) AMCG00011005 NA coding CM030133.1 CM030133.1 7392972 ~ 7408696 (-)