XLOC_007905


Basic Information

Item Value
gene id XLOC_007905
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 27322219 ~ 27339439 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016405
gatgacatgaggGTGTTTTTGGTTCAGGAGAAACATGCGGTAGCTGCTGTTTTCCTGGGTTGGTCTGCATATCGTCATTAAATTATCTGATGGCATGTGATTCTGCGTGAGCATGGAGGAGCTATGGAGGCGGACACGGGTGATGGGTGAATGGAGACTGAGATCACCACGTCGTTTCGGTGGACTGACCAAAACAAAGCAGGATTGCTCTGTGTCTAATGGTGGCCGGCGGAAAAGCTTTCCCATCAGATCACATGGTGGATAAATGAAGCTTCTTGAAATGGAACGGGAAGAATGTGGCACGGATCGTAAAACTGGGACCACAGGGAACGGTAAAAGGGTTCGGATGGCAGCCAGATTCATCAAGTCATTTATGCCATTCCTGAAATATGTCAAACGGCCATTAGGAATGCTGTTCCGAGTACTAAAAGGAGGAAAGAATTAAATATGTGAACCGGGGATGGTGGCTTGTGAGCAGcgtatttaaaattctaaaaagCTGTCCTGAATCTCTCCTAATCAGGCGCctctaattattaaatattttcagaCTGCTTTAGTGTAGTATGTCTACAATCAATTAACATGAttaaaattttatacattttatttaatagatttgggcaaaaaaaaataaataaaaggctcTTATGTAATAGTCAAAACATTTAGttcggtgcgtgactgtcagacgcACTCCATcttgataaaacaaataaataaataagtaaataaaggaACTGGAAAAAAGACTGCCGTAAGTCACATTCATttcttaaagtaaaatattaattaaaatgtcttGATTTGAGAATATGCATAGACTTGATCAGTAAAactagcttttttttctttttcttttaatcctaATTTTAATATGACGGACTGACAGACTGACCGACCGAACCACCATCTCAACTGTTTTTTTGTGCCCGTTTGTCGTGCAggccagataaaataaatccccCGCtcattcttttcttttaatttttcttaTGCAAAATGataataagttttattttatacctgtcaaccctcacgtattttacaattctatcctgcCC
>TCONS_00015428
gtgTGCGAAGTATTTAAGGGCCGGGCTGGAGACgcacgatttccgggagattatcattcattttgcGGGCATCGGGGAATCTCTATGCGGTatactcccgcaacttccgggagacttgggatatCTGTTTCTCGGTCTGACCGATTTCCCCAACCACAAACAACCCAAAACATAACATTTTGAACTTAGCTTGCAAATCACTTCCTGTTTCCTCCGTCTGAATTTCGCGCCACCGCAATGACATCATGCCATGTGCAGTAAACGGTTTCTAAAAGTTAACATCTTGTGAGCATGTTCCTTTGTATGCAGGTGTGCGAATGTTGTCAGCGATTACATCAGGATAAAGAAAGTCATGGAGGTCTGGGATgatatgaggGTGTTTTTGGTTCAGGAGAAACATGCGGTAGCTGCTGTTTTCCTGGGTTGGTCTGCATATCGTCATTAAATTATCTGATGGCATGTGATTCTGCGTGAGCATGGAGGAGCTATGGAGGCGGACACGGGTGATGGGTGAATGGAGACTGAGATCACCACGTCGTTTCGGTGGACTGACCAAAACAAAGCAGGATTGCTCTGTGTCTAATGGTGGCCGGCGGAAAAGCTTTCCCATCAGATCACATGGTGGATAAATGAAGCTTCTTGAAATGGAACGGGAAGAATGTGGCACGGATCGTAAAACTGGGACCACAGGGAACGGTAAAAGGGTTCGGATGGCAGCCAGATTCATCAAGTCATTTATGCCATTCCTGAAATATGTCAAACGGCCATTAGGAATGCTGTTCCGAGTACTAAAAGGAGGAAAGAATTAAATATGTGAACCGGGGATGGTGGCTTGTGAGCAGcgtatttaaaattctaaaaagCTGTCCTGAATCTCTCCTAATCAGGCGCctctaattattaaatattttcagaCTGCTTTAGTGTAGTATGTCTACAATCAATTAACATGAttaaaattttatacattttatttaatagatttgggcaaaaaaaaataaataaaaggctcTTATGTAATAGTCAAAACATTTAGttcggtgcgtgactgtcagacgcACTCCATcttgataaaacaaataaataaataagtaaataaaggaACTGGAAAAAAGACTGCCGTAAGTCACATTCATttcttaaagtaaaatattaattaaaatgtcttGATTTGAGAATATGCATAGACTTGATCAGTAAAactagcttttttttctttttcttttaatcctaATTTTAATATGACGGACTGACAGACTGACCGACCGAACCACCATCTCAACTGTTTTTTTGTGCCCGTTTGTCGTGCAggccagataaaataaatccccCGCtcattcttttcttttaatttttcttaTGCAAAATGataataagttttattttatacctgtcaaccctcacgtattttacaattctatcctgcCC
>TCONS_00016406
GAGTGAGAGACTTGTCTGAGTAGGGTCGTGTGTGCGTGCGagagtacctgaagagcggtgggggtgagctGCGTGCGACGTAACgttacctgaagagcggtggggGATAAAGAAAGTCATGGAGGTCTGGGATgatatgaggGTGTTTTTGGTTCAGGAGAAACATGCGGTAGCTGCTGTTTTCCTGGGTTGGTCTGCATATCGTCATTAAATTATCTGATGGCATGTGATTCTGCGTGAGCATGGAGGAGCTATGGAGGCGGACACGGGTGATGGGTGAATGGAGACTGAGATCACCACGTCGTTTCGGTGGACTGACCAAAACAAAGCAGGATTGCTCTGTGTCTAATGGTGGCCGGCGGAAAAGCTTTCCCATCAGATCACATGGTGGATAAATGAAGCTTCTTGAAATGGAACGGGAAGAATGTGGCACGGATCGTAAAACTGGGACCACAGGGAACGGTAAAAGGGTTCGGATGGCAGCCAGATTCATCAAGTCATTTATGCCATTCCTGAAATATGTCAAACGGCCATTAGGAATGCTGTTCCGAGTACTAAAAGGAGGAAAGAATTAAATATGTGAACCGGGGATGGTGGCTTGTGAGCAGcgtatttaaaattctaaaaagCTGTCCTGAATCTCTCCTAATCAGGCGCctctaattattaaatattttcagaCTGCTTTAGTGTAGTATGTCTACAATCAATTAACATGAttaaaattttatacattttatttaatagatttgggcaaaaaaaaataaataaaaggctcTTATGTAATAGTCAAAACATTTAGttcggtgcgtgactgtcagacgcACTCCATcttgataaaacaaataaataaataagtaaataaaggaACTGGAAAAAAGACTGCCGTAAGTCACATTCATttcttaaagtaaaatattaattaaaatgtcttGATTTGAGAATATGCATAGACTTGATCAGTAAAactagcttttttttctttttcttttaatcctaATTTTAATATGACGGACTGACAGACTGACCGACCGAACCACCATCTCAACTGTTTTTTTGTGCCCGTTTGTCGTGCAggccagataaaataaatccccCGCtcattcttttcttttaatttttcttaTGCAAAATGataataagttttattttatacctgtcaaccctcacgtattttacaattctatcctgcCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016405 False 1064 lncRNA 0.38 3 27322219 27334804
TCONS_00015428 False 1428 lncRNA 0.40 4 27322219 27339283
TCONS_00016406 True 1194 lncRNA 0.40 4 27322219 27339439

Neighbor

gene id symbol gene type direction distance location
XLOC_007903 pcdh11 coding downstream 25096 26995114 ~ 27297123 (-)
XLOC_007904 CT990607.1 coding downstream 146378 27175726 ~ 27175841 (-)
XLOC_007902 NA coding downstream 525506 26776218 ~ 26796713 (-)
XLOC_007901 BX571940.1 coding downstream 606624 26715192 ~ 26715595 (-)
XLOC_007900 neurog1 coding downstream 617390 26703331 ~ 26704829 (-)
XLOC_007906 CR854833.1 coding upstream 217047 27556486 ~ 27556622 (-)
XLOC_007907 NA coding upstream 358586 27698025 ~ 27714037 (-)
XLOC_007908 NA coding upstream 648024 27987463 ~ 28005263 (-)
XLOC_007909 tsc22d3 coding upstream 659317 27998756 ~ 28052551 (-)
XLOC_007910 CU019650.1 coding upstream 788719 28128158 ~ 28128278 (-)
XLOC_007641 CU855896.1 misc downstream 24914379 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 24914788 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 24915147 2406945 ~ 2407072 (-)
XLOC_007899 NA non-coding downstream 619867 26681546 ~ 26702352 (-)
XLOC_007887 NA non-coding downstream 1254339 26062022 ~ 26067880 (-)
XLOC_007915 NA non-coding upstream 1238034 28577473 ~ 28580808 (-)

Expression


Co-expression Network