CI01000016_03555967_03558776 (C1H1ORF43, CUNH1ORF43)


Basic Information

Item Value
gene id CI01000016_03555967_03558776
gene name C1H1ORF43, CUNH1ORF43
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3555300 ~ 3559186 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_03555967_03558776.mRNA
AGAAACAAACTTTTTGGGAACTTTTTTTAAACAGCAAACATGTATTTTGGCTGTTATAGCCTAATGTATTGCAGCAATGGTGGCATATTTAATTGCAGTTTATTTTGAAGTATGCAATAATTTATGCAAGGATAGTTTTGCTGACCTCATCATGACCTGAGGGCATTTTTGAGAAACCCTGAACTGATGTTGCGGTATTCATTCCAAACCACAAGGAGGCGTCAAAGATGAGTAGACGGAAGAGTTTTTCCATGAAAATCATGCGACGAAGAGACTGCAGGAGATGTCAACAAAAACTCCCCTGAAAATGCCGCTGTCAACCTGAATAATAACGAGCTGAATTTTACAACTGACTGCCAGTATCGATCAATTATATCTTCCTTTTATGAGCGTTTAACTAAATTCTCACAATGGCAGAAGGAAACACTCTTTCCGGTGTAAATGTTGTACTTGTTATGGCCTACGGAAGCCTGGTGTTTGTGCTGCTGTTCATCTTTGTGAAAAGGCAGATAATGCGCTTTGCTATGAAGTCTCGCAGAGGACCGCACGTCCCGCTGGGTCATAATGCACCGAAGGACCTTAAAGAAGAGATTGACTCCCGTTTGTCCAAAGTGAATGACATTCGCTATGAGCCACATCTGCTCTCTAAAGATGACGATCGACTAAAGCATCAAGGCCAGAATGGTTGTTATAATTATCTCTTCAGAATGCAAGCATTGGATGCCATCAGAGACTCTGATCTCCCATTTCACGAGTTGTGTCGCAGTGCCAGTGCTCTGACCGGGCGGCGCTACAGGAAGTGGCTGCTGGACCTGCGAAACTCTCATTCTCTGCTCAAGAGTCACGGTGCGCTCCTAGATCGCTTAGTGGAGGGCTACGACAGCGCTCGCCATGGGACCGGGATGTTTGGCGAGGCAGAGTTTGTGAAGTATAAGGAAGATCTGGCTGAACTGGCTGCTGTTGTCAAGTCCTACTCCAGCAGCACCAGTCTAAACCAGCAGCACCAGTCAGCAGCTAAAGATCTGACCAGCTCCCCCGGCCCCTCATCTGCCTCCACCATTCAGGTTACTTACCTGCCCTCCACTGGACAGCGCAGCAAGAGGCCCAAACACTTCCTGGAGCTCAAAAATTTTAAAGACAACTATAATACGCTAGAGAGCACACTTTAGAGGATGAAACCCTTTTAAGGAACTGTGTAGATTTAACTCAAACTGTGAAACAGAAGTGTCGCTCTACACAGGAAAATCTTTCGTGTAGAAATGACCACAGTGGGAGATGCAGTAAAACCTCAAATCACATTGAGAATGTGAGAATGACTTAAGATAGAACAAAATCTATGGGATAAAAGTCATTGTGAGAGCAATGCAAGAATGTTACATTTCTGATTTTATTGTTGTCCTGCCAGAACTCACACCATTTTCTTATTTTAAAGGTCATAGCTACTGTTTACCCTTTTCTTTTTAACTGGAATAACTGTTCTGGCACAAACGTGGATTAAAAACAGCTGTACGGACATTCATTCTTACACCTGTTTTATATTAAAACAACCTTGAGGTTTCCAAAAAAGATCCTGTGTCAGAGAAGACAAGGCTGGATATCATTCTAACAGAAACTGGGAGAGACAAATATTCTTTTCTGTGCTACTGATCAGCTTATTGTCCTTATTTTTTACGTGCAGTTGTAATTTTTAATTAGTTCATGTTGGTATAAGGAGGAACAAAGTGCTTTGAGACATTAATTGATATGGTTGTTGTCATGGTAATGTAGATAAAGAGCTATGAGAAGCTGTCTGTGTTGACTTTCACTGTATTATAAAGTCTTATCAGATCTAATAAA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_03555967_03558776.mRNA True 1836 mRNA 0.42 7 3555300 3559186

Neighbor

gene id symbol gene type direction distance location
CI01000016_03322103_03326683 NA coding downstream 224538 3322003 ~ 3330762 (-)
CI01000016_03082653_03084658 NA coding downstream 470642 3082386 ~ 3084658 (-)
CI01000016_03072793_03080040 NA coding downstream 475260 3072728 ~ 3080040 (-)
CI01000016_03064633_03068201 NA coding downstream 486208 3064562 ~ 3069092 (-)
CI01000016_03062846_03063013 NA coding downstream 492028 3062846 ~ 3063272 (-)
CI01000016_03647744_03675574 NA coding upstream 88467 3647653 ~ 3675585 (-)
CI01000016_03719404_03722988 NA coding upstream 159981 3719167 ~ 3723058 (-)
CI01000016_03834829_03843163 ZNF687 coding upstream 275314 3834500 ~ 3843266 (-)
CI01000016_03881771_03883341 NA coding upstream 321307 3880493 ~ 3883466 (-)
CI01000016_03921124_03930996 NA coding upstream 360869 3920055 ~ 3931162 (-)
G96605 NA non-coding downstream 657 3549415 ~ 3554643 (-)
G96610 NA non-coding downstream 9965 3545119 ~ 3545335 (-)
G96609 NA non-coding downstream 11145 3543873 ~ 3544155 (-)
G96606 NA non-coding downstream 15273 3539786 ~ 3540027 (-)
G96600 NA non-coding downstream 23511 3531586 ~ 3531789 (-)
G96637 NA non-coding upstream 3668 3562854 ~ 3563738 (-)
G96644 NA non-coding upstream 22033 3581219 ~ 3581429 (-)
G96655 NA non-coding upstream 49150 3608336 ~ 3608877 (-)
G96614 NA non-coding upstream 64651 3623837 ~ 3626004 (-)
G96658 NA non-coding upstream 75073 3634259 ~ 3634460 (-)
G95070 NA other downstream 569659 2985260 ~ 2985641 (-)
G94786 NA other downstream 1279025 2270836 ~ 2276275 (-)
CI01000016_04921091_04922518 NA other upstream 1353522 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1766333 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1853073 5412248 ~ 5415906 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012520 NA coding CM030138.1 CM030138.1 20292730 ~ 20297061 (-)