CI01000016_03921124_03930996


Basic Information

Item Value
gene id CI01000016_03921124_03930996
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3920055 ~ 3931162 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_03921124_03930996.mRNA
AACTGAAAAACTGAAATACATGAGCATGTGACACACTTCTCCATTACACATTTCCACAGTCAGTGAAATGTAGCTGTAGCGTGAGATTCAAGACTAAACACTCAGTTGGTCAAGTAAGAGGAAGGGTTGGCAGAAAGATTGTCAGAAGATTGTTAAAAAAGATAAAATGTGTCATATGTGTCTTCTGGAAATGATCATTCTCTGTTCACTTCTAACAGGTATGACTGTAGCTGAAGTAACTCATGTGTTCAGGACTTTTGGTGAAAATGTCCGTCTGCCCTGTAATAATGCTTTTCCTGGCTGCACATCAACTACATGGAACTATAACAGACATTCAGAGACAGTTGAACTGATTGCTGGAGGGAAAAAGAAGAATAACATAGAGAGACGTGAGAGACTGAGTGTGGGGTCTGACTGCTCTCTGAACATCAAGAAAGTCACACAAGAGGATTATGGGCTTTACACCTGCCGACAATATGTGAATGGAAAACAAGGAACTGATGCACGTGTTTATCTGCATTTTCTTCATGTCTCTTCATCATCCTCACAGACTGAGATCAGACCAGGCAGCTCTGTGACTCTCTCCTGTCAGTTGTATTATGAAAGAGTCTCTTGTGATACTTTGGTCCATACTGAGGGAATTGAGCTGATCTGGGTGAATCAGGCTGGTGTTAGTGTGATGACAGACTCCAGATATCAGATATCATTCTCCTCAACACACTGTATCAGCACTCTGACTACAACACTCCTGAATGAAGATCTCAACAGAGAGTGGAGATGTCAGGTTACTCAGAGAAATCAACTGAAGACCTCAGCCACATATACTGTCAAGTATTCAGCTTCAAACGAGACAAAGACAACGACTCCAGTCACCAACTTAAAGACAACAACAACTGTAAATAAACCAGTAACTTCTAGACAATCAGTGATTGTAATGGTTGGTGTTGTTGCTGCATTGGCTGTTCTCCTTCCTGCTGTTATTTTTTGTGTGGTTTGTAAAAAAAGAGGGGATAATAGAAGAGGGACTAATGACTTTCTGGTCACAAATATGAAAAAATATAATGGAACCAATGATACAATCAACATTTCCATTCATCCTACTGCCAGCGCTAATGAGCAGCAAGGTAATGTGACTTATGCTGAGGTTGTCACATACAGTAAAAACCCAGCCAAAAATAACAAGGTTCATGTTGAAGATAAAGTGACTTACGCTTCAATCAGAGGAGCAACAGCTGGACCTCAGGATAACTGCAGTCAACTTTATGCCTCTGTGAACAAAAACTGTCACAAATAAATCAGACAGTTATTAATCATACAAAGACCTCATAATATCATGAGGAGAGAAATGCCTATAATTGACTTTGTTAACCTGCTGACTTGTTAAATACCGTCTTTCAAATGCATGTTAACAAACAAACTCAAGTGTAGAACAGATTTATTTGTAGGACGTTCAGGATTTTTATTTCAGAGTTACTTTCTTGTTGATCAAGAGAACCGTTTTAAATTATAAATCATTCCAAATCTTCCGTTTCTCTTATTTTTTGCAACTCTTCATTCTCCAGTAGTGTTTTTAATAGTCATACTGTATTACGTACTGGACAACATCCTTATTTGTGACTAATGCAGAGATGATTGAAAGTGTTCTCAACAGAGCTGTAGAGGAAGTGCTGTGCAGTCAAATTCTGCACTGTCAGCCGATCATCTTTCTGGTGACTATGTGCTATGTAGGGTACAACTAAAGGCACACCCTAAGAAAAATGTACTTTTCACTACTCCTGTAGTTTTTGATTGCAGAATTTTTCTTCAATGTTTTTATTGAACTGATGAAGCAACAGATTTTGTGTGAGAATAAGAGTGTGTTATAGAGTGTTTTTTTTTTTTAATTGTACAAATGTATGTGTGTGAGGGACCGGGAAGCCAAGGACAAGGTGATATTTATTTTTGTTCAATAAATATACTATGGTTAAAATGTTCATTTTAAAAATACACAAACAAAATAATATTTAAAAAAGTAAAGATTCTGAAACATTGAATGATATCCCATAATAATTTAAAATAGCTTTACAGTAGTAACAATTAATGTGATATATAATTAATATTTTAAAATATGATGGTTTCATTATAAATATGGTGATTAGGTGGACACCCAAGTTGATACTGTAATCATATGATATTTACCATCTGAATCTAACCATGTCATGTCAAATGGAAAAGTCTGGTATCATGAGTTAGCCCCTCCTCCTTGGAAGAAAACATCCGTATGTGACCAATCCTTCTGCAAAAAATACATTTCAAGCTAAAAAAAGTAATTTTTGTCATACTGTCCAAACTGTTTGCGTGAAGCACTTTAAAGTCATATTAAA

Function

NR:

description
diverse immunoglobulin domain-containing protein 3.1 transcript variant 2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_03921124_03930996.mRNA False 2363 mRNA 0.36 9 3920055 3931162

Neighbor

gene id symbol gene type direction distance location
CI01000016_03881771_03883341 NA coding downstream 36589 3880493 ~ 3883466 (-)
CI01000016_03834829_03843163 ZNF687 coding downstream 76789 3834500 ~ 3843266 (-)
CI01000016_03719404_03722988 NA coding downstream 196997 3719167 ~ 3723058 (-)
CI01000016_03647744_03675574 NA coding downstream 244470 3647653 ~ 3675585 (-)
CI01000016_03555967_03558776 C1H1ORF43, CUNH1ORF43 coding downstream 360869 3555300 ~ 3559186 (-)
CI01000016_04044171_04047247 TRIM108 coding upstream 112853 4044015 ~ 4047305 (-)
CI01000016_04084854_04101874 PIANP coding upstream 153562 4084724 ~ 4101953 (-)
CI01000016_04181435_04188590 FLOT1B, FLOT1, FLOT1A coding upstream 250101 4181263 ~ 4188590 (-)
CI01000016_04226585_04232287 NA coding upstream 295277 4226439 ~ 4232287 (-)
CI01000016_04264738_04270463 ABHD16A coding upstream 332767 4263929 ~ 4272171 (-)
CI01000016_03921124_03930996 NA non-coding downstream 6607 3920055 ~ 3931162 (-)
G96686 NA non-coding downstream 17297 3863165 ~ 3902758 (-)
G96687 NA non-coding downstream 32297 3862069 ~ 3887758 (-)
G96688 NA non-coding downstream 55110 3864500 ~ 3864945 (-)
G96629 NA non-coding downstream 87493 3831525 ~ 3832562 (-)
G96719 NA non-coding upstream 36180 3967342 ~ 3967897 (-)
G96728 NA non-coding upstream 38349 3969511 ~ 3971844 (-)
G96729 NA non-coding upstream 42645 3973807 ~ 3974048 (-)
G96723 NA non-coding upstream 49542 3980704 ~ 3984004 (-)
G96724 NA non-coding upstream 55640 3986802 ~ 3988814 (-)
G95070 NA other downstream 934414 2985260 ~ 2985641 (-)
G94786 NA other downstream 1643780 2270836 ~ 2276275 (-)
CI01000016_04921091_04922518 NA other upstream 981546 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1394357 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1481097 5412248 ~ 5415906 (-)
G97341 NA other upstream 2227824 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 4957671 8888833 ~ 8894737 (-)
G96675 NA non-coding downstream 69492 3819667 ~ 3820628 (-)
G96672 NA non-coding downstream 78621 3809510 ~ 3811499 (-)
CI01000016_03322103_03326683 NA coding downstream 534999 3322003 ~ 3330762 (-)
G96626 NA non-coding downstream 64793 3734525 ~ 3800968 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009865 zmp:0000000608 coding NC_007127.7 CM002900.2 21867161 ~ 21867872 (+)
bowfin (Amia calva) AMCG00006286 NA coding CM030134.1 CM030134.1 1573128 ~ 1574818 (+)