CI01000016_04636548_04646848 (ZNF526)


Basic Information

Item Value
gene id CI01000016_04636548_04646848
gene name ZNF526
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4635827 ~ 4646916 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04636548_04646848.mRNA
ATAACCCCAGCACTGTATCTGCTTTTCAGCACACCAAAAGTCTAGTTTAGAACTGTTCTGCAGTTACTATGAGTGATCAGGAGTATGTGGAGCATCAGTACATGTGCAGTGAGTGCCAGCAGCTCTTTAATACGCTGGAGGAGGTGCTGGTGCACCAACAGATCCACACCGGAGCAGAGGGGGACGAGGCTGAGCTCCTGCCAAGCCTTGAGGACTGTGACACTGGGGAGAGCCAGTATCAGTGCCTGGAGTGTGGAGCCATCCTCAGGAACCCAGACGAACTGCTGCTGCATCAAGAGCTGCACATGAGAGAGGCAGGCCAGGAGCTATGTGAGGTCACAGAGGTGGATTCTGTGGATGCAGAAGTGCCAATCCAGTACCAGTGTCTGGAATGTCTGGCTCTTTTTGACACACCTGAACTATGGTTGGCACACAGACAGACACACAGCAGAAGCAGCACCCACAGCAGCCTAAACACTGACACAGAATATGTTCTTCAGGCAGATGGTTCAGTCACTCCAGTTCAGTTGCTCAATGTGCAAAATCTAGTTCTGGATGAACAGAGGGCAGGCCAGATCCTGACCCTAGCCCAGGCTCTTCGAGAGCAAGAAAACCCATCTAAAACTGCAGCCCCTCCCAGAACTATGCTAGTGCCAGCAAATGCTTCCCTGCCCGGCTCCACCTCTGCGATGCTCCGCCTTCAGTTTTGCTCCGCCCAAGCGATCGCTGATGGTTCTGCCTCAGCTACTCTTCGAAAAGCTAAACTCCTCGCCCCTCTCTTACCTGCCGATCCTATCCGGCTGGACAATGTGACCACTTTGAACCTTCTCCCTTCCTCTGGTCAGGTGAACACACTAAAGAAGCAAAATGAAGAAATTTTAATTATCCATCCTTATGAGTGTTCTGAGTGTAATCTGCTATTTAGCACACCAGAGGATTTCCTTCAACACCAGGGGGAGCACTTCTTAGGCCAGGACAAAGAGACTGGGGACACTGGGGTGATGGTGGGGTATGAAGACAGTTCTGGGGCTAAGGAAGATGAAGGAAGAAGCGACGGATCAGAAGAATGCAGCAAAATTGGAAAAGTTAGTGGTGGGAGACGTACGTACACCGCCCGCTCAGCTACTTTGGGTCTGACGTCGTCTGTCTCATCCAGCAATCTTCAATGTGAGGAATGCAAAAGAACTTTCACCTCTGCCAATCGGCTTGTGGCACACCTTCGTGTGCATGAACAAGGAACACACGAGTGCCCAGAGTGTGATAAAGTATTTAAGAAGTTGGTGTCCCTTCAGACACACATGCGCACACACTCCGGTGAGGCACGTTTTCTGTGTGTGGACTGTGGACATGGTTTTACCACAGAGATGACTCTTATGATACACAGGAAATCTCATACATCTGAACCACTGCACAAATGCCCATTTTGTGCCAAAACCTTCACCAACATGACCAAGTTCTTGTACCATCGCCGCACTCACAGAGTACGTGAGCCAACCACACCAGTCTCTCAGTTTGTACTGGCACAGCAGTCACCTCTCTCTATCATCCAAAGAGCAAGAGAACGAGAGGCTGCTTGGAGGAAAGAAAGACAGACGGTGACGATTCCTCCTGTGAAAGATGACGGAAATGAGTCAAGCGACACAGGTCCTGTGCTCATTGAAGGTATTGCTGTGGTCTCCCAGTCTTCAGAGTTGACAGAGAATGGGCTTTATGCTGAACACTCAAACACAGAACAAGAACAAAATGGCGGGAAAATGCTGACAGATGACCCAAACCATTCAGCTACTGCCAATGTGGAAGGAGGAGGAGAGGAGGAAGGTAAACACAGGACTCCTGCTGCTGAGGAAGAGCCAAAATTTCCATGCTCCATATGTAAAAAAAGATTCTCCTCACAGGTCCGTCTGTTGCGGCATCGTCGAACGACTCATATGACCGAAAGGCGTTTTAAATGCAACATCTGCGGGAAACCGTTCAAAAAGCAAATCCATCTGCGAAACCACCTGCGCACACATACGGGCGAGCGGCCGTTCCAGTGCAGCGTATGTGGAAAGACCTTTTCCTCTCTTGCAAATCTTTCCCGCCATGGACTCACACACACTGGTGTCCGTCCATACCGGTGTGACATTTGCCACAAAGCCTTCAGTCAATCATCGAATCTACGTCAACACCGTCAGCATCTTCACAGCAATGCAACACCCTCACCCTGTCCAGACTGCTCTGCCACTTTTATCCGTCCTGCTAAACTCGTAGCTCATCGTTTTCTTCACCACCCAGGGTCACCGGCACCTTACCCCTGCCCGCACTGTTCCGAGGGGTTCTTGCGCAAACGGCAGCGAGACATACATTGCCTGGAGGAGCATCCTGACCTGACACAGCCGCATTGCATCTCCCAGGACTCCCAGGTTAGAGGTCAGCAGGGTTTGACAGATGACACTGAGCAACAAAGCGCTCCATCAATGACAAAACCCAATCTGGATTGCACTATTTGCGGCAAGCGCTTAAACTCTCCTGCAAATCTTCGCCTGCACCAGCTAAGTCACGGACTTGGGCCTGGCCGGCCACGAGGCTCCAACTCCGCCCTTGGGAAGTCTCATCCTTGCCCAGTATGTGGAAAACTGTTCGTTTCAGCCTCAAGCGTTACACTACACCAGAGAGTTCACACCGGTGAGCGTCCGTATCCTTGCGCGATCTGCGGAAAAAGGTTTCGCCAGAACACGCACCTGCGGGAGCACCTTCGTACACATTCGGGTGAGCGTCCGTTCCGATGCGAGTTCTGCGATAAGGGCTTTGTGCAGAGCATGCATCTGGCAGAACACCGGCGTACACACACGGGCGAGCGGCCGCATGCTTGCGGCGAATGTGGAAAGACATTCAAGACAGTTTCAAACCTTAGAAATCATCGTAAGACCCACGCCCGCTCCCAAAAGCAACAAGAGCCGAAGCACAGCGGAGAAGCAGTGCCCGCAGAAGCCAACACAGCAACTGTTACTGTTGTGGAGGCTTCTGAGATGGACATGGCAACAGCAATACCATCTTTCTGCCAGCAGGGGATGCAGCTTGGACAGCCGCAAGTCATTCAGATACAGACATCTAACCTGACACAGGTCTGTATGCTAGTTTTGCTGTGTTTTGTTACAATTTTTGTGCACCAAGTAACAGTTTATATTTTCTCACCGTTTCAGACTCAGGGCACTCCCACTATCATGTGTAATGAGTTTGGAGAGACTATAGCCATCATTGAGACAAGCGGAGACCTGGCAGAGGCCATCGAGCTGTACCACACTGCACTGGAGGGTGGCATCAACATGGAGGCCATCACTGTGGACAACCTGCAGTTATTGTGAGAGAAGTGCAGCATTCCAGTGGCCATCATCTTGGAAATTTGAATATTACAATTAAAATATGAGCATAAGTAATGTCAGATCAAGCACAGAGACAAAAAAAAAAAAGGAAAAGCAGAGGTTGAATTAAGACAGTGTTGCAAATTCAAGACATTGTATTAATTTCCATTAAAGTTCTTGAATGTGTGAATAACCTCAAGAAGCCACTCTAATAGATCCATTCAAATATTTTTCAGCCTTTTTTTGACTTTTTGAGACAGGTCAATTTTTTAAAAAATAGGGCTGATTTTAGAGGACGCAACTGAAGTCTGTGATAAGACTGCTCCTGTTTTAGGACTAGGAACGGACAGTCTTGGTTTCTGACCACACACTGCATGACACTCTTGTTCTGACGGAGCCAGATGGAAGGCATGAAGGCACAGATTTAGAAAGAAGTACACCCACGGACAGTGGAGCAAGTTGATACCACAGGATGGCTTAAAATGTTTCCTGGTTTACATTCTAACCTGCAGTTCTTGCAAGGAGTTCATTTAAGGGCATTGAGCTGAAGAACAAAACAACAGGAAAGAGGGAAATCAAAACATGTTAGTGCTCAATCATGGTCAAACATTATGCACCAAGTGATCCCCATGTGTTACATACATCACATTTCTCAGTCTGTACACTGAATGTTTGTAGCTTTTTTAATGTTATGAAGCTGATTTGGAGAAGTCTTGCAAATAAA

Function

symbol description
znf526 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF526 (zinc finger protein 526) and ZNF574 (zinc finger protein 574).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04636548_04646848.mRNA True 4065 mRNA 0.49 6 4635827 4646916

Neighbor

gene id symbol gene type direction distance location
CI01000016_04422169_04424433 RABAC1 coding downstream 211394 4421995 ~ 4424433 (-)
CI01000016_04385978_04389107 NA coding downstream 245757 4385722 ~ 4390070 (-)
CI01000016_04370577_04377413 NA coding downstream 257710 4370042 ~ 4378117 (-)
CI01000016_04333323_04333836 NA coding downstream 301991 4332873 ~ 4333836 (-)
CI01000016_04300720_04301736 NA coding downstream 332320 4300649 ~ 4303507 (-)
CI01000016_04696937_04698098 NA coding upstream 49769 4696685 ~ 4698618 (-)
CI01000016_04802496_04812976 NA coding upstream 155538 4802454 ~ 4813266 (-)
CI01000016_04921091_04922518 NA coding upstream 273952 4918975 ~ 4922518 (-)
CI01000016_04927541_04930989 PAFAH1B3 coding upstream 279178 4926094 ~ 4930989 (-)
CI01000016_04936283_04939240 TLR21 coding upstream 289097 4936013 ~ 4939240 (-)
G96921 NA non-coding downstream 6546 4628038 ~ 4629281 (-)
G96915 NA non-coding downstream 8386 4620698 ~ 4627441 (-)
G96970 NA non-coding downstream 30293 4605090 ~ 4605534 (-)
G96969 NA non-coding downstream 31313 4604074 ~ 4604514 (-)
G96968 NA non-coding downstream 31899 4603579 ~ 4603928 (-)
G96916 NA non-coding upstream 2571 4649487 ~ 4654397 (-)
G96977 NA non-coding upstream 17843 4664759 ~ 4664982 (-)
G96983 NA non-coding upstream 39945 4686861 ~ 4687114 (-)
G97050 NA non-coding upstream 169714 4816630 ~ 4897720 (-)
G97069 NA non-coding upstream 205184 4852100 ~ 4853062 (-)
CI01000016_03921124_03930996 NA other downstream 704776 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 970514 3647653 ~ 3675585 (-)
G95070 NA other downstream 1650186 2985260 ~ 2985641 (-)
G94786 NA other downstream 2359552 2270836 ~ 2276275 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 678603 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 765343 5412248 ~ 5415906 (-)
G97341 NA other upstream 1512070 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 4241917 8888833 ~ 8894737 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location