CI01000016_04743905_04763216 (GRIK5)


Basic Information

Item Value
gene id CI01000016_04743905_04763216
gene name GRIK5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4743821 ~ 4763507 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04743905_04763216.mRNA
GTATAACAAAGTTAATCTCATTTGTGTGTTCATCTAGGGGGTGCTATAGGCAGCAGAAGGCATCTCCATGAGGAGCGGTAGAAGATGCCGGAACTGCCAGCGCTCCTGCTGTCGATTTACTTCCGCTTCCTGTTAGTCACCGTGGTTACCATGCCGCCTTCTTCCCTGAGCCAGACCCCTGTTCTATCATCCGTACGGATGGCGGCAATTTTGGATGACAGCTCTGTCTGTGGGCGTGGGGAGAGGTTAGCTTTAGCGCTAGCACGCGAGAACATCAACAGCGTCATGGAGGGCCCGGCTCGTGCTCGCGTGGAGGTCGACATATTTGAACTCCAGAAAGATTCTCAGTATGAGACTACAGATACTATGTGCCAGATTCTGCCAAAGGGTGTGGTCTCTGTGATTGGCCCCGCCTCCAGTCCTGCGTCGGGCTCCATAGTCAGTCACATCTGTGGGGAAAAGGAGATTCCGCATGTCAAAATAGGTCCGGAAGAGACTCCGCGGCTTCCTTACCTGCGCTTTGCGTCTGTGACTCTGTATCCTAGCAACGAGGATCTGAGCCTTGCCATCGGAGCCATCCTACGCTCCTTCAGCTACCCATCGGCTAGTCTGGTCTGCGCTAAGGCCGAATGTCTGTTGAGACTGGAGGAGCTGATAAGGCGTTTTCTGATCTCTCGAGAGACGCTGTCAATCAGGATGCTGGATGACAACCTTGACCCCACGCCTTTACTGAAGGAGATTCGTGATGACAAAATAGCTACAATAATTATTGATGCTAATGCATCTATTTCTTACCTTATACTGAAAAAGGCATCAGAGCTGGGAATGACATCAGCGTTTTACAAGTACATCCTCACAACTATGGACTTCCCGTTGCTGTGGTTGGATGATATAGTGGATGAGCAGTCAAACATCGTGGGCTTCTCAATGTTTAACACCACCCACCCTTTTTACCTGGAGTTTATCAGGAGCCTAAATCTGTCCTGGAGAGAGGGCTGTGACATTAACCCGTACCCCGGACCAGCGCTGTCATCGGCCCTGCTGTTTGATGCGGTCCATGTGGTGGTGAGTGCAGTGCAGGAACTCAACCGGAGTCAGGAGATTGGCATCAAGCCTCTCAGCTGCACCTCCCCTCAGATCTGGCAACACGGGACCAGCCTCATGAACTACCTGCGTATGGTGGAGTATGATGGCTTGACAGGTCGAGTTGAGTTCAACAGTAAAGGCCAGAGGACCAATTACACCCTCCATATTCTGGAGAAGCACAGGGGAGGCCACAAAGAGATTGGGATCTGGTACTCTAATAACACTCTGCTGATGAACTCCACCAGTCTGGACATCAACGTCTCTGAGACTCTGGCTAACAAGAGCCTCATCATCACCACCATACTGGAGAACCCATACGTGATGAGAAAGGTGAATTACCAGGAGTTTGAGGGGAACGAGCAGTATGAGGGTTTTTGTGTGGACATGTTGAGAGAGCTAGCTGATATCCTCAAGTTCACCTTCCGCATCAAACTGGTGGACGATGGGCTGTATGGGGCACCTGAACCCAACGGCTCGTGGACGGGCATGGTGGGAGAGCTGATCAACAGGCAGAAAGCTGATTTGGCTGTAGCTGCTTTTACCATCACATCTGAGAGAGAGAAGGTCATTGACTTCTCAAAACCCTTTATGACCCTGGGCATCAGTATTCTCTACAGGGTCCATATAGGCAGGAAGCCAGGTTATTTCTCCTTCCTGGATCCCTTCTCACCGGCTGTTTGGCTCTTCATGCTGCTGGCTTACCTCGCTGTCAGCTGTGTGCTTTTTCTTTCTGCTAGATTGAGCCCGTATGAATGGTATAACCCTCACCCGTGTCTGCGTGAGCGCAGAGACCTGCTGGAAAATCAGTACACACTAGGAAACAGCCTTTGGTTTCCTATCGGGGGCTTCATGCAGCAGGGGTCAGAGATCATGCCCCGAGCCCTGTCCACACGCTGCGTTAGTGGGGTCTGGTGGGCATTCACTCTTATAATAATCTCCTCATACACAGCGAATCTGGCTGCTTTTCTGACAGTGCAGAGAATGGAAGTGCCAATCGAATCGCCCGATGACCTGGCCGATCAAACTAATATCCAGTACGGCACCATTCATGGAGGAAGCACCATGACCTTTTTTATGAACTCCCGTTATCAAACGTATCAGCGGATGTGGAACTACATGTATTCTAAGCAGCCCAGTGTCTTTGTGAAGAGCACAGAGGAGGGCATCGCACGAGTCTTGAACTCTAAATATGCCTTCCTCCTTGAGAGCACCATGAACGAGTACCACCGCAGCCTCAACTGCAACCTCACCCAGATCGGAGGCCTGCTGGACACCAAGGGTTATGGCATTGGCATGCCTCTGGGTCTTGGGATGGAGAACATTGGCGGTATATTTGTGGTGTTAATCTGTGGCCTGATTATTGCTGTGTTTGTGGCTGTGATGGAGTTTGTGTGGTCCACACGCCGATCAGCTGAAACAGACGAGGTACGGCCTCTCTCCTGCGACCGCCAATATCACAGTCACACTACAGAGATGTTGACGGAATTCCGTAACGCTGTTTCCTGCAAGAAAAATTCTCGTCTGCGCCGTCGACGCCCCCTGTCCAGCTCTCTGGCCCTTCGGCACCCCACCCGCATCACTTTAGGGGCCCCGCGGCCCCTGCGCCTTGTCAGAGAGATGCGCCTTAGCAACGGAAAGCTCTATAGTGGTACTGGACCCCTGACAGGAAGCTCAGGGTCAGGAGGAGGCCCCTCAGACATGGGCCCTGGCCCCCAGCGACTCCTGGAGGACCCGTTAGGTGCCAACAGCACCCCCGCAGTGGCCCTGGGACCACCCGCAGTGACAGTGCCTCTGCCGCGGGGCTGCACTCACGTGCGCATTTGCCAGGAGTGCCGGCGTATCCAGAGTCTCCGCACAACCTCTTGCACACGTATCCCTCCTTCCTCTGCCCCTCTGCCTCGCCTGGCTCCACTCCCTCCTCACTCATCCTCCAACACAGACAGTGAAGGGGGTGGCGGGCTGAGCCCGTGCCGGATAGGTCACTCTCCACCGGCAAAAGGCTGCACTATACCGCCACCTCAGTCTAGCAACAACACAGACCTAATGGGAGAGCAGAAATGAGAAAAAAGTGACTGACAAAAAGGGGAGACAAAAGTATGACATGTTTTTGCAATATTTGCCCCCTTGTTCACAATCATAGACGAATGTACTTTCCATCTTTTCCTTGGTACGACAGAATTATCCTTTTCTTTTGGATAGCCATGTGTCATATCAAGGATTCTTTTGTACTATTGAACAATGTACTATAACATTGACCATGTCTGAAGTAACCTTGAAAATGAGTTGGTTAAGATTTAAGATTGTCCGCCTCAATCTGAGGATTTAGATGTGCTACAAGACAGCACAGAGATA

Function

symbol description
grik5 Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Is expressed in brain; eye; retinal inner plexiform layer; retinal outer plexiform layer; and retinal photoreceptor layer. Orthologous to human GRIK5 (glutamate ionotropic receptor kainate type subunit 5).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05205 GRIK5; glutamate receptor, ionotropic kainate 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04743905_04763216.mRNA True 3438 mRNA 0.52 18 4743821 4763507

Neighbor

gene id symbol gene type direction distance location
CI01000016_04666701_04684512 NA coding upstream 58984 4665922 ~ 4684837 (+)
CI01000016_04649660_04661928 GSK3A, GSK3A.S, GSK3AA, GSK3AB coding upstream 80266 4649578 ~ 4663555 (+)
CI01000016_04590667_04633139 CIC, CICB coding upstream 109371 4590667 ~ 4634450 (+)
CI01000016_04557546_04579200 NA coding upstream 164320 4557546 ~ 4579501 (+)
CI01000016_04507602_04509233 NA coding upstream 234588 4506935 ~ 4509233 (+)
CI01000016_04770017_04795909 NA coding downstream 6510 4770017 ~ 4797509 (+)
CI01000016_04815074_04817608 NA coding downstream 51567 4815074 ~ 4817889 (+)
CI01000016_04826146_04828890 NA coding downstream 62581 4826088 ~ 4829158 (+)
CI01000016_04829592_04837305 NA coding downstream 66085 4829592 ~ 4837457 (+)
CI01000016_04850826_04860560 NA coding downstream 86808 4850315 ~ 4860685 (+)
G95489 NA non-coding upstream 189811 4547513 ~ 4554010 (+)
G95485 NA non-coding upstream 197749 4537680 ~ 4546072 (+)
G95673 NA non-coding upstream 226727 4516876 ~ 4517094 (+)
CI01000016_04428669_04441464 DEDD1 non-coding upstream 300174 4428669 ~ 4441464 (+)
G95659 NA non-coding upstream 325207 4417888 ~ 4418614 (+)
G95692 NA non-coding downstream 50674 4814181 ~ 4927792 (+)
G95703 NA non-coding downstream 88534 4852041 ~ 4852964 (+)
CI01000016_04932388_04935392 NA non-coding downstream 170196 4931929 ~ 4935904 (+)
G95718 NA non-coding downstream 198743 4962250 ~ 4962586 (+)
G95751 NA non-coding downstream 216594 4980101 ~ 4980313 (+)
G95648 NA other upstream 469916 4272636 ~ 4273905 (+)
G95439 NA other upstream 879964 3862175 ~ 3862305 (+)
G93406 NA other upstream 3816289 905400 ~ 927532 (+)
G95792 NA other downstream 456373 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 642362 5405791 ~ 5407963 (+)
G96389 NA other downstream 2397134 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 3020558 7783987 ~ 7784996 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location