CI01000016_04829592_04837305


Basic Information

Item Value
gene id CI01000016_04829592_04837305
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4829592 ~ 4837457 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04829592_04837305.mRNA
ATCTATGAAGGAATCCTTGAATTCCAGACGACTAGTCGAGGTGGAGCAATTCTGGGAAATATGAGTGAAAGGAATGTGAATCAGGCTGAAAATAATGACAATATATATGTAAATCATGGGGTTTCAAACAGGCCAAGAGCTGCTACACCCCCACCAGAACAGTATTTTGGTCAAGATCTGCAGATCCCTGAGCCGCCTAATAAAGCAGAAGGAGACAGTGTGGTGTTCGCTCCTGATAACCCACCACCCTCCACATCGATTTTTATAACTCAATGTTTTTTTACTTCAACTCTTATAATTACAGTAGTGTCTGGTGTAACTGCAGTAAACCCCGCATATGAAGGCAGAATCAGTTTTGACAGCAACACTCTCGCTCTGACGCTGCAGAACCTGAGACTGAGTGATTCTGGAATATATGGACTGACTCTACAAACTAAAAAAGTATCTAATGTCAGGCTTATTGGTCCAGAGGAACCATTAATAGAGGGCGAATCATCTGCTAACATCACCTCTGAGGGAACTGGCACAATCACTTCTGTGCAGTGGATGAAAGATAACAATCCTCTGTCTCCTAGCAACAGCATCATCTTCTCACCTGATAACAAATCAGTGTCCATCAGTCCAGTGCAGAGATCAGACAGTGGGGAATATCAGTGTACATATACAAACCCTTTCAGCTCTGAGACGGCAACATACAGCCTGATCATCAACTATGGACCAGAAGATGTTTCTATTAAGGGTCCGGATGTGGTGGATTTAGGGGTTCGTGTGTCTCTGTCTTGCTCTGCAAATTCTGAACCTTCTGCCTCATTCAGATGGATGTTTAATGGAAAAGACACCAGTGTGACCACAAACACATTCACTATAGATAAGACTGATGTCACACACAGTGGAGATTATGACTGCACTGCCTGGAATAGTGTCACAAACAGAAGCGACTCACAAAGACATGCTTTACTAGTTAAAGAGGCCTGTGAGAGAATAGAATGTTCTTGCCTCTCGCTCTGCCTCTGCCATTAGATACAAGGTAACTGTGCCTAAGCTGTGCTTCTCATTCTGCCATTGAAGAATATTTACAGGATGAGCGGGGACCTCTAATATAAATAGGTTGGGGTCTCTTGTTCCACTTTTCAAAACAGACTGGATTTACAGCCAAACAAATGGAAGAAATA

Function

NR:

description
LOC557548 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04829592_04837305.mRNA False 1172 mRNA 0.43 5 4829592 4837457

Neighbor

gene id symbol gene type direction distance location
CI01000016_04826146_04828890 NA coding upstream 434 4826088 ~ 4829158 (+)
CI01000016_04815074_04817608 NA coding upstream 11703 4815074 ~ 4817889 (+)
CI01000016_04770017_04795909 NA coding upstream 32083 4770017 ~ 4797509 (+)
CI01000016_04743905_04763216 GRIK5 coding upstream 66085 4743821 ~ 4763507 (+)
CI01000016_04666701_04684512 NA coding upstream 144755 4665922 ~ 4684837 (+)
CI01000016_04850826_04860560 NA coding downstream 12858 4850315 ~ 4860685 (+)
CI01000016_04893170_04904103 NA coding downstream 55676 4893133 ~ 4904259 (+)
CI01000016_04911596_04920356 NA coding downstream 72712 4910169 ~ 4920819 (+)
CI01000016_04932388_04935392 NA coding downstream 94472 4931929 ~ 4935904 (+)
CI01000016_04969263_04970446 CXCR3.2 coding downstream 131045 4968502 ~ 4970632 (+)
G95489 NA non-coding upstream 275582 4547513 ~ 4554010 (+)
G95485 NA non-coding upstream 283520 4537680 ~ 4546072 (+)
G95673 NA non-coding upstream 312498 4516876 ~ 4517094 (+)
CI01000016_04428669_04441464 DEDD1 non-coding upstream 385945 4428669 ~ 4441464 (+)
G95659 NA non-coding upstream 410978 4417888 ~ 4418614 (+)
G95703 NA non-coding downstream 14584 4852041 ~ 4852964 (+)
G95718 NA non-coding downstream 124793 4962250 ~ 4962586 (+)
G95751 NA non-coding downstream 142644 4980101 ~ 4980313 (+)
G95726 NA non-coding downstream 219539 5056996 ~ 5088557 (+)
G95648 NA other upstream 555687 4272636 ~ 4273905 (+)
G95439 NA other upstream 965735 3862175 ~ 3862305 (+)
G93406 NA other upstream 3902060 905400 ~ 927532 (+)
G95792 NA other downstream 382423 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 568412 5405791 ~ 5407963 (+)
G96389 NA other downstream 2323184 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2946608 7783987 ~ 7784996 (+)
G97824 NA other downstream 3176906 8014363 ~ 8015775 (+)

Expression


Co-expression Network