CI01000016_04893170_04904103


Basic Information

Item Value
gene id CI01000016_04893170_04904103
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4893133 ~ 4904259 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04893170_04904103.mRNA
TTATAAATGCTTTGGGGGTCTGACTAGCGTTCACTGCATGAGTGACCGCCCAGAGCAGTTCCCTTTCGCTTTGTCATCACAGGAGGAACGCTCGGAGACGGACAAGCTCATATTCCATTCCATTCCAACGGAAAACACTTCAGTGTCCTCCGCCCGAGCTGAAGAAGCGCTGAGGCACGCTTCGGTCCCGGCAAAAGGACATCGCGATCCGGAGGAAGAGAGAGCAACAGGGATGGACCCGTCTCTCGCTCCTCAGCCAGATCGCCACGCGAGCCCCACGATCACATTGTGGGTGCTACCCCTTGAAATAAGCAAAGCGAACGCGAAGCACTTAAACTTTGAACATTCACAATGCTCGCACTCGCCCTATTACAACGCAAGGGCAGCATGCTCTTCCCCAAACAAACAAAACAATACTGGACAATATTTGGGTCAAGATCTGCAGATCCCTGAGCCGCCTAATAAAAAAGAAGGAGACAGTGTGGTGTTCGCTCCTGATAATCCACCCTCCACATCTATTCTTATAACTCAATGGTCTTTTACTACAACACCTATAATTACAGTAGGGTCTGGTGTAACTTTAGTAAACCCCGCATATGAAGGCAGAATCAGTTTTGACAACAACACTTTCGCTCTGGAGCTGCTGAACCTGAGACCGAGTGATTCTGGAATATACAGACTGACTTTAACAAATAGTACTGGAGGGACACTTACAGGAGAAACTTCACTACAAGTGATCGGAAAAGTATCTAATGTCAGGCTTATTGGTCCAGAAGAATCATTAATAGAGGGCGAATCATCTGCTAACATCATCTCTGAGGGAACTGGCACAATCACCTCTGTGCAGTGGATGAAAGATAACAGTCCTCTGTCTCCTAGCAACAGCATCATCTTCTCACCTGATAACAGATCAGTGTCCATCAGTCCAGTGCAGAGATCAGACAGTGGGGAATATCAGTGTACATATAGTAACTCTTTCAGCTCTGGGACAGCAAAACTCAGCCTGATCATCAACTATGGACCAGAAGATGTTTCTATTAAGGGTCCGGATGTGGTGGATTTAGGGGTTCGTGTGTCTCTGTCTTGCTCTGCAAATTCTGAACCTTCTGCCTCATTCAGATGGATGTTTAATGGAACAGACACCAGTGTGACCACAAACACATTCACCATAGATGAGACTGACTTCACACACAGTGGAGATTACGACTGCACTGCCTGGAATAGTGTCACAAACAGAAGTGCCTCACAAAGACATGCTTTACTAGTTAAAGCAGCACAAAGGACACAAGAGCCTGACTTGAACTATGCAGACATCAGCCATTTCCAGAAGGGAAGTGGAGAGAGAGTGATTCTGGGGAATAGAAGTGAACCTAGTACAGAGTATGCAGAAGTAAAGCGAAGTGGAACGAAGTCAGCTGCTCCTCCACCTCCCTATGGAAGTCAACCATGCAGTAAAACAATAAGTATCAAACCCTCCTTTGCGCAGGTGGCTAAACTGACCGTATTACAACTCTTACAGCCCTTGTTAAAATATGCACCCCCAGTGCCTTTTAATTATAACTTGATAATGTTCCAGATCATTCAATTTGAAACTGTGACAAATGTTCAAAGCAGAAGACTGTGGTCTGCTCATGTGTAAATTAATATCCATCTTATCTGAACACTCCATAAACACTCTTCCTCTAAATGTTTTAGATTTATAGGCTAATATTTAGCTAGTATTGATCACATACACCAAACAGTTTCTCAGAAATAATCAGATACATCCTCATTCTTTCTTTCTTTCTCTGGGAAA

Function

NR:

description
LOC557548 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04893170_04904103.mRNA True 1795 mRNA 0.45 9 4893133 4904259

Neighbor

gene id symbol gene type direction distance location
CI01000016_04850826_04860560 NA coding upstream 32448 4850315 ~ 4860685 (+)
CI01000016_04829592_04837305 NA coding upstream 55676 4829592 ~ 4837457 (+)
CI01000016_04826146_04828890 NA coding upstream 63975 4826088 ~ 4829158 (+)
CI01000016_04815074_04817608 NA coding upstream 75244 4815074 ~ 4817889 (+)
CI01000016_04770017_04795909 NA coding upstream 95624 4770017 ~ 4797509 (+)
CI01000016_04911596_04920356 NA coding downstream 5910 4910169 ~ 4920819 (+)
CI01000016_04932388_04935392 NA coding downstream 27670 4931929 ~ 4935904 (+)
CI01000016_04969263_04970446 CXCR3.2 coding downstream 64243 4968502 ~ 4970632 (+)
CI01000016_04981918_04985412 NA coding downstream 77351 4981610 ~ 4985635 (+)
CI01000016_05064542_05068162 NA coding downstream 158655 5062914 ~ 5068810 (+)
G95703 NA non-coding upstream 40169 4852041 ~ 4852964 (+)
G95489 NA non-coding upstream 339123 4547513 ~ 4554010 (+)
G95485 NA non-coding upstream 347061 4537680 ~ 4546072 (+)
G95673 NA non-coding upstream 376039 4516876 ~ 4517094 (+)
CI01000016_04428669_04441464 DEDD1 non-coding upstream 449486 4428669 ~ 4441464 (+)
G95718 NA non-coding downstream 57991 4962250 ~ 4962586 (+)
G95751 NA non-coding downstream 75842 4980101 ~ 4980313 (+)
G95726 NA non-coding downstream 152737 5056996 ~ 5088557 (+)
G95731 NA non-coding downstream 155912 5060171 ~ 5091009 (+)
G95648 NA other upstream 619228 4272636 ~ 4273905 (+)
G95439 NA other upstream 1029276 3862175 ~ 3862305 (+)
G93406 NA other upstream 3965601 905400 ~ 927532 (+)
G95792 NA other downstream 315621 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 501610 5405791 ~ 5407963 (+)
G96389 NA other downstream 2256382 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2879806 7783987 ~ 7784996 (+)
G97824 NA other downstream 3110104 8014363 ~ 8015775 (+)

Expression


Co-expression Network