CI01000016_05064542_05068162


Basic Information

Item Value
gene id CI01000016_05064542_05068162
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5062914 ~ 5068810 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05064542_05068162.mRNA
TTATAAATGGCTTTTTCTCAACAACTGAACATAATGAATTTTTGTAGTCTTGCATAAATTGTTACATTCCATTAGAATCAATTTATGAATGATTTACACATAAATTATGCTCATCTTTCCTGAATGAGACCCAGTGAATTAGAATTGTTAAGACTTGGATGGGTGTGTGCGTGTACCCTGGGATCGGTGGAGGTACTGGTGTCATCTTCAGGGTCACTGCTCTTTTAGTAACTTTTGTATCTTTAAGAATAAATTTATATTTAATTAATACAGTGAAGACTATGCATTGATTCTTTTTCACATTTCATTATTCAATATCTGAGTGTTACGTACTCTGATTTTTTGTTCCCTCCCCTTTTTGTTATTGGTTGCTGTGCTTCTCCCCTTAAGTCTGACGTCACACTGCAGCGCTTCCGGGTCCAAATGCTCTATCTCATACCACAAGAAAACAATATACACACATGATGTGGTGTAATACTACCAAAAAATTATAATCATAACCTTTATCTCCATACCAAAAATCCCAGATGGCCAGACAGTGATTCATCTTATAAATCGTTAATAGCCTATATTAATGTCTGTGACGCTGTGAGCACGGAGACTGTTGTGTAGACTGTAAGTATTTTAAATGTTTAACTTTAAAATGTTAAATGTTTAATATGAATAAATAAAACTCATAAACGGCCGTCTAGATGGCTTTTCTCAAGTGAAACGAGCTGGGGCTTGGACCCAGAAACGGCTTTCCTTACATCACGACTTAACAAGCGGATAGAGGGTATGCATAGATGTCACTTTCCCGCCGGAACTCGCTCCCTCAGCTGGACTGAGTGGCAAAAGAACCTGCTGCATGACTGGATTTAATAGGGGAAACTGCGAAAACGCGAGTAAAACAAACGATTACACTAAAGGAAGTGTTCCTTATGACATGTAAATGAAACCTAATCCATGGATATTGACATGCAGCCAGGAATCGTGTTTCCTGACATTTATATGTGCCTGATTTCGACACCGGGGAAATACATAAAGCAAATCTGGCTGTGAACGCTTTAACTACAATATAGATAAGTCTAAATACGAGTGTTCACTTATATCAATGTTATATATTTTGTCATATCGTCAAGCCCTAAAACTTCTGTAGTTTTTGTCAGTGTTTATTTAAAAACACCCAATTATACAGAATATAAGATGGTAAATATTTAATTGATGAGTTGTCAACAAAATAAAAATACAATATATAGGTCTATGATTTTACCCCAAAATCCAACATTTTGACACAAAATGATAACTGCAAAACATGTTTCTTTGCCTGGAGTCCAGCTGTTTCTTTGAATTGCAGCAACCTATTTGCTTATTTTTTAATAAGTCTGTAAAAATATACCTCAGATTTTGTGTCAAAGCTATTTGTACAGTCAGTCGCAAAGCTCTTTCCCATTTTGGATGTGTTTTGTGTGTTTTTCGTGGCATTTATGCTGAAAACCAATGCTGCCACTCAGTGGGCGTAACCGCAGTCATAACGGTCGACGGTGACGTCACGTGCATACCCTCTATTGGTTTCTTCCTGTTTTTCGGCTCTCTGCTGTCTCTCTGTTTGTAGGTGCTGTGATTGGTCGAGTAACGTGTCTATCATGATGAATGATCTCGAGAAACATCCAATCATTAACTGGTGCAAGATAAAAGACGCTGTGGAGAACACAGTAACTCTAATGTTCTTGTTTATGATGGAAAAGTCTGGAAACATCCTGAAGACTTGCCTGGTAGGAAGATGTGTGTCATCAGCATATACACTCATACCTGTTCACCAGATCCTGTTAGGCGCAAACTGCTGCAAAGCAAGGGCTTGCAAAATTATTGTCCCATGTGTTGTTCTTTTTAACATTTTGAAGACGTATTCTGCCTTCAAAGAGGAGGATGAACTTGAAGAAGAGGGTCATGAAGAAGATGAGGTTCACGAAGCAAACCCTCTGCAACAAGATTTCAGGCTGGATTTGCTGTCAGATGCCATCGTGAATGCATTATTTAATGAGTAATATAGCCAAGTATTGTAGCAGTATAATATTAAAAATAAAATGTATTAGTAGTAGCAATATTAATAATAAAATGTATTAGTAGTAGTAGCCTAGTAATGTTAATGATAAAATGTAAGCTAGTAGTTGCAATTAAAAGTAATGTTATTTATTAGTAGTGCTATTTATTAGTAGTATTAATATTATATATGAATGTATTAGCTATATATTTATTATTGGTGTTTTATTAATATATTTGTTCTTAAAATTACAAAACTTTTCAGATCTGTCAAAATGTATATATTTGTCAATTGATGTGACTACTATTTTCCCTTCACTTTGTAGCTGCAGAAGTTTGTTGTTAAGAATGAAGTTTAAAGGTCTTGATTTTCCTTCTCCTTTTTGAGTTTTTCGATCTCTAACTGCAGTTTTATCTTTTGTAGCTGTAGGACTTCTTTCTGTAGTTCCAGCAGTTCTTCTCTTGTAGCGGCTGGAGAGGGAAATGCAAGAGAAATGTTATTTTCTTATTTGTAGTCAATCAATGCTACTGCTTATACATGATTAATTTTGTTAATCTTACATGAGTTACATAGATTTCCTTACATGATTTTTGCATAACCTTTAAATTATGTTTGTTGACATATAGATATATGTGTGTAACCATTGTATGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05064542_05068162.mRNA True 2675 mRNA 0.35 3 5062914 5068810

Neighbor

gene id symbol gene type direction distance location
CI01000016_04981918_04985412 NA coding upstream 77279 4981610 ~ 4985635 (+)
CI01000016_04969263_04970446 CXCR3.2 coding upstream 92282 4968502 ~ 4970632 (+)
CI01000016_04932388_04935392 NA coding upstream 127010 4931929 ~ 4935904 (+)
CI01000016_04911596_04920356 NA coding upstream 142095 4910169 ~ 4920819 (+)
CI01000016_04893170_04904103 NA coding upstream 158655 4893133 ~ 4904259 (+)
CI01000016_05100744_05111181 P3H3 coding downstream 31934 5100744 ~ 5111389 (+)
CI01000016_05117302_05122058 GNB3A, GNB3 coding downstream 46616 5115426 ~ 5122712 (+)
CI01000016_05192890_05204267 TPI1.S, TPI1, TPI, TPI1B, TPI1A coding downstream 123972 5192782 ~ 5204759 (+)
CI01000016_05229439_05231984 NA coding downstream 160529 5229339 ~ 5233159 (+)
CI01000016_05335334_05352325 RASIP1 coding downstream 266524 5335334 ~ 5352667 (+)
G95751 NA non-coding upstream 82601 4980101 ~ 4980313 (+)
G95718 NA non-coding upstream 100328 4962250 ~ 4962586 (+)
G95692 NA non-coding upstream 135122 4814181 ~ 4927792 (+)
G95785 NA non-coding downstream 55414 5124224 ~ 5127893 (+)
G95737 NA non-coding downstream 135077 5203887 ~ 5206127 (+)
G95793 NA non-coding downstream 164386 5233196 ~ 5325915 (+)
G95844 NA non-coding downstream 187705 5256515 ~ 5256900 (+)
G95845 NA non-coding downstream 187791 5256601 ~ 5258167 (+)
CI01000016_04829592_04837305 NA other upstream 226259 4829592 ~ 4837457 (+)
G95648 NA other upstream 789009 4272636 ~ 4273905 (+)
G95439 NA other upstream 1199057 3862175 ~ 3862305 (+)
G93406 NA other upstream 4135382 905400 ~ 927532 (+)
G95792 NA other downstream 151070 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 337059 5405791 ~ 5407963 (+)
G96389 NA other downstream 2091831 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2715255 7783987 ~ 7784996 (+)
G97824 NA other downstream 2945553 8014363 ~ 8015775 (+)

Expression


Co-expression Network