CI01000016_05124385_05128589 (CDCA3)


Basic Information

Item Value
gene id CI01000016_05124385_05128589
gene name CDCA3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5124259 ~ 5128975 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05124385_05128589.mRNA
ATTTAAATGCTCTCTCTCGAGTCACAAGGAGTTTGGATTAGAAGACGAGTCAAGCATTTCTTTGTTTATATCTGTTTTATACATGTATATGTTTAAAACGTGACAGAGAAACATTTAATCTGATCTGTTGTGAAATATAAAAGGAATATATAGTGGACTGCGCGTGGAAAACGAGCTTTAAGGTGAGTTTGATTATTGAACAATAACTGTATATTTTTGGTAAAATGCTACATGGCACGATGTGCTTATTGTTTAATGTATTTTTAAGCTATAAACGCTTTGTAATGCGTGCAAAAATCAGTATTTTAAAGTTTTAACTACTTTTTTTCGCTTCTTACCATGCATGTTTTTATAAACAATGGTGTTTTCTAGCATACAGAGTAAAAATGGGTGCCAGTGAAAGCAAGCTGTCTGTGGCATCAACACCAAAGGTAGATCCGAGCCAGCGGCCGAAAGCAGCGCGTGTAGCGAGCCTCGCAGACCCGCGTTCACCGTCCTGTGCTATCGACCGCACACCTATACAGGTGGGTGTGGCTTACTCTCCTCTTCCTGTGGTGGAGTCCGTTGGGCCTGGATTTGTTGACCCCCGCTCACCCACGCCTGGCATTACTCGAACACCAATAAAGATGAGCGTCACATCTCTCGCCCGGCGACTGAGCACCTTCTTTCTCAATGATGTTAAGTCTGGTGGCGACTCTGTTTCGACTCTTCCTCCGGTCTCCTTTACCAAACACCCCAGCCTGCCCAATGTGGCTCGGCAAAATGAAACAGGCCCCAGAGAGCCCCTGCTCCCTGTGGTAAAAGCTCAGAACTCAGCCTCCGTCCGCGAATGCACAGATGCCGTGTTCGCTCCTGTGGCGTCCTCTCCTTCTGAGGGCTACGGTTCCATTTGCAGCAGCCCGTTTGTGTTGATTGGAGACACACAGATGGAGGTAGAGGTAGATACTGAAGCCTCGCTGGAAGAGGCAGAGGAGGCTCTGCTGCTTGGTGCTTCGCCTTTAAAGAAAGAGCTTAGTTTGAGTCTTCTTGCATGTCGTGAAGGTGTTTACTCCTCTTCTCTGGAGGAACGTCCTCTGACTCCTCTTCCTCCTGCTGAGAGGCAAGCGAATGAAGATCATTCTTACGCACTCTTTTCAGTCGCCCAACAGTCCACAGAGTCTGAAACGTCCACGCCTGTTGCTGAAGCTGTTGTGACCCTGGAGGAAGCTGAGGTTACATCCCAGATGTCTGAAGAACAGGTCACAGCTGCTCTTCCAGAGTCGAGCCATGAGCAGCCAGAGGTGAGCAAACCTCTCACACCTCAACCGGCTGTTGCATCCAGCAAATCCAGCCCTGTGACCAGCACCCAGGTCGAAACGGTCCAGTCTGGCATCCGTTGTCTGAAGTTTGACACCCGCAGCCCCAGTCAAGCCATTTTTAAACCCCAGTGGTTGGGGGTGGGCTTCGGGACCGCTGGTGTCAGAGCAAGAGGGGTACAGGGACGTGGAAAAACCTCTGTCTCTTCACCGCTCTCCACCAAAAACACAGCCACAAATGAGAATAACAACATGGTTGTGCGCGCCAAACAAAGACCGAGAGAAAAAGTTTTGATTGGTGAGGGCAGATCGCCTCTGCAGATCCTGAGGGAGGCTAATTCACCCAGAGACCGCAATTTACAGATGAAGCTGAAAGTGTCCACCCCTGAAAAACAGAGATTCAGCCAGATGGACAGGAGAGCTCTGATTCTGTCACTCAACAAGGAGAATGAGTGAAACAAACTGGGAAAACCAGGATAAATCCAGCCAACACTATGTATATACTACAGTTTTTAGCCTTAAACTACATGATTATTCTTTTTTTCCATTCTTCTACTGTTTCTATGTGTGTTTGTAAATAAA

Function

symbol description
cdca3 Is expressed in proliferative region. Orthologous to human CDCA3 (cell division cycle associated 3).

NR:

description
Si:ch211-69g19.2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05124385_05128589.mRNA True 1877 mRNA 0.48 6 5124259 5128975

Neighbor

gene id symbol gene type direction distance location
CI01000016_05086983_05098757 UBP5, USP5 coding downstream 25502 5086813 ~ 5098757 (-)
CI01000016_05057407_05062686 NA coding downstream 61489 5057226 ~ 5062770 (-)
CI01000016_05052905_05056425 NA coding downstream 67834 5052375 ~ 5056425 (-)
CI01000016_05037135_05040030 NA coding downstream 82895 5037135 ~ 5041364 (-)
CI01000016_05011639_05013290 NA coding downstream 110969 5009773 ~ 5013290 (-)
CI01000016_05131457_05146340 PEX5 coding upstream 1773 5130748 ~ 5146340 (-)
CI01000016_05151082_05166013 CLSTN3 coding upstream 22082 5151057 ~ 5166013 (-)
CI01000016_05170621_05189845 LPCAT3 coding upstream 40739 5169714 ~ 5189845 (-)
CI01000016_05205373_05206602 NA coding upstream 76356 5205331 ~ 5206602 (-)
CI01000016_05208242_05218239 NA coding upstream 78444 5207419 ~ 5219816 (-)
G97135 NA non-coding downstream 783 5123080 ~ 5123476 (-)
G97045 NA non-coding downstream 50731 5067684 ~ 5073528 (-)
G97037 NA non-coding downstream 153479 4969389 ~ 4970780 (-)
G97101 NA non-coding downstream 156957 4967002 ~ 4967302 (-)
G97100 NA non-coding downstream 157953 4966094 ~ 4966306 (-)
G97139 NA non-coding upstream 62051 5191026 ~ 5191428 (-)
G97012 NA non-coding upstream 63817 5192792 ~ 5204813 (-)
G97148 NA non-coding upstream 212064 5341039 ~ 5341800 (-)
CI01000016_05374626_05378364 NA non-coding upstream 216426 5373845 ~ 5386465 (-)
G97160 NA non-coding upstream 273168 5402143 ~ 5402369 (-)
CI01000016_04921091_04922518 NA other downstream 200855 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1193208 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1458946 3647653 ~ 3675585 (-)
G95070 NA other downstream 2138618 2985260 ~ 2985641 (-)
G94786 NA other downstream 2847984 2270836 ~ 2276275 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 196544 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 283284 5412248 ~ 5415906 (-)
G97341 NA other upstream 1030011 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3759858 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3807814 8925960 ~ 8945229 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010493 si:ch211-69g19.2 coding NC_007127.7 CM002900.2 12052010 ~ 12060782 (-)