CI01000016_05325805_05330265 (COX6B2)


Basic Information

Item Value
gene id CI01000016_05325805_05330265
gene name COX6B2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5325519 ~ 5332874 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05325805_05330265.mRNA
AGACCAAAAACCATAGCCAAAAGCTCTGAGAGCAGTTGGTCTCTCAGACAGGAAGCACTGACAGCAGGCTGTGAAGGCTCCTGTGCGTCATTCAGACTTGTCCCTCCATGTTTGTTTTTAGTGTGTAAGTGAAAGCTCTTCCTGGCTCCTGGTCAGAGGGAACGTGTTTGGAATGAAGTGTGCATACAGTAGCACACGCTTTCTTTGGTAAAAAGTTATTACTGTATACATCTCTCACACTCCAACTCTAGCTCGTGAATGAGAAGATGGTTTGGTAGCCAGCAGTGCCCTACAAAGGCAGAGGACAGTAACTACACTGTGTTCAATTACTGTCCCCTAGTTAGTGCTGTGCACAGATTTTTTAACTGATCATTATTGATTTATAAAAGATATATATATAGAGAGAGAGAGGGGCCTATCTCTTACATTGGTGCCGTTACCCGGATGGGAGCGAGGTTTATGGGGTTGAGTATAACGGAGGCCAGCTAGTATAGTTGATGTGCGAGTAAACCTCACTCCTCTGATCTCAAGAGATGCTCTAGCGACTGACACTAAGGGTCGCATCTTTTAGCCTCCTTGTTAGAGCGTCCGACTCCCACGCCGGAGACCCAGGTTTGAGGCCCGTGCAGAGCAGGGCGAGTAGGACCTGGGTAGAGGGGTTACATATATACACAGTCAAACCAAAATTTATTCAGACACCTTGAACATTTCATTCATTAATACAGTTTATTCACTATAGTTTAAAAAAATGGTAATAAAATATGACAAGATCTCAGAGTTAAACTGTGTCAGAAAAAAATAATCTTAACTATGTCAGATAACACTTAAGAAAAACATGGTCAGGTCAAAGTGAATAATTTTTGGTTCCAAATTTTTATCAATTTTACTTGTAGTTCACTGTATGAAGAATTTTTGGGTATAATATGTCAGTTTACTTTATTTTGCTATCCTCACTTACATAAATGAACTATAGTGTCCTGTAAAAATATACCAAAAATATCAAAAACGTCTGAATAATTTCTGTTTTGACTGTATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATGTATGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATATCTGGCTAAAACCGCAATAAACAATACTATTAAATTTGTCAGAAAGTAATAGAGCAAATATGCTCTATTGTATACACAACTACAACACAAAAAATAAAAATATACAGAAATAAATTAATATCCTGCTCCAGACAATGGATTTAGGCCTGTTCCAAAAATAAATGCTAAAATAAACATTCTTTACAGAGATGGAAAGGTTCTGAACATAACGTTAACCATTATATGCTGAAGGCCTTTTTCCACTTTATGAATTACCCGTAGCCACTATTCTCATCATGTTCCAATTTGAACCAGGACATTGGCGGACACTTTCTGCAGCAAGTCACATCCGTGATTTCAGTTGTTCGTTAATTTCTTTTTTGTTTTTTGTTTTTTTTTTACATTTTTTTAATATAGTATTTTATATTGTATATTGCGATTATTATTTTATTAAAATTACTGACACATTATTTTATAGCCTATTATCGTTGTATAATACTATTATTAATTTATTTGCTTCATATTACATCTGAAGACTAGAATAAACACAAGAGGAACGTACATAAATGAAGTGTGTAAATAATAATAAATAGGCCTACTAAAGTACTAATATTGGTCTCGTAAGCCCCGCCTTGCCTCATCCTTATGCTCCCCCCACATATTTTGATTTCCCACAATTCAGTGCGCTTAGAAAGTCTTTCGAGAGGACGTTACGATAAGGGCATAGCAAGAGGTAGGCCTCAATATTTATATTTGTTTAGTCCAAGTTGTCTTGAAATTGTTTATCTTGTGTAAGTTTTGTTGAAACGCTTTACTTTTACTCTATTGTAAAATTCATGAAATATCAACTGGCGGTTTACGAGAACGGTTCATTTGAGTTAGTTAGCGAGCTAGCAAGCTGGCTACTATAAGCCGGTTACACCAAGGTTATGTTACTTGAGTGAATATATCTGCTGTTTTCAGCCTATTTTAAACATATTTTACGCGTTTACAATTTCACTATTACTTAAAATTACTTCTTGAAATTTTAAAGAGCTCGTTTAAAGTATCACAAGTAAGTTTTAGGCCTCGTATGATGAGACTGTGGCTGGCGTCAGTTCAAACTGTGTCTGTGAATATCACTCTCAAATGTTTTATTACGCTGTCCAGCTACGACATTTAAGCAGCTCGATGGTGTACTTTAAGTTGAGTACTTTGGTAATGTTGTTGATCTGTGAATGTTTATGTCACGCAGACCTATTATCTTTGACTGAAGATGGCTGATGTTATTGAGGACAAGATCAAGAACTACAGAACGGCTCCATTCGATGCCCGTTTTCCAAACACTAATCAGACAAGAAACTGTTTCCAAAATTACCTTGACTTCCACAGGTGTAATAAGGTTTTGTCAAGCAAAGGGCAGGAAACTTCTCCCTGCGAATGGTATCAGAGAGTGTACAAGAGCCTGTGTCCAATGAGCTGGGTGGAGAAATGGGATGGACAGATTGAGGATGGAAGCTTCCCTGGAAAGATCTAAATGGTCTCTGTTACCTTCAATTCATGGACTCCCAACATTTTGTAGAGTACCTCATAATAATTATCCAATTTTGATGTTGTCTTAGTTATTGGTTTGCCCGCTGGAGGATGAAAGGTCATTCAGAGTGCAACTTGGAATCATGTGACCTTTTGACCTTTAGCATTTTGAGGTCCTACATTAGCATCACGCTTTGTGTCACTACATCTTACTGTTGCAATTTACAAAATAAA
>TU110385
CAATTCAGTGCGCTTAGAAAGTCTTTCGAGAGGACGTTACGATAAGGGCATAGCAAGAGACCTATTATCTTTGACTGAAGATGGCTGATGTTATTGAGGACAAGATCAAGAACTACAGAACGGCTCCATTCGATGCCCGTTTTCCAAACACTAATCAGACAAGAAACTGTTTCCAAAATTACCTTGACTTCCACAGGTGTAATAAGGTTTTGTCAAGCAAAGGGCAGGAAACTTCTCCCTGCGAATGGTATCAGAGAGTGTACAAGAGCCTGTGTCCAATGAGCTGGGTGGAGAAATGGGATGGACAGATTGAGGATGGAAGCTTCCCTGGAAAGATCTAAATGGTCTCTGTTACCTTCAATTCATGGACTCCCAACATTTTGTAGAGTACCTCATAATAATTATCCAATTTTGATGTTGTCTTAGTTATTGGTTTGCCCGCTGGAGGATGAAAGGTCATTCAGAGTGCAACTTGGAATCATGTGACCTTTTGACCTTTAGCATTTTGAGGTCCTACATTAGCATCACGCTTTGTGTCACTACATCTTACTGTTGCAATTTACAAAATAAAACGCACAATTTGAATTGATTTCAATGGGGTTTTTTTTTTTTTTTAAATAAAGTGCA

Function

symbol description
cox6b2 Predicted to be part of respiratory chain complex IV. Predicted to be active in mitochondrion. Is expressed in brain; gill; heart; liver; and skeletal muscle. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COX6B1 (cytochrome c oxidase subunit 6B1) and COX6B2 (cytochrome c oxidase subunit 6B2).

GO:

id name namespace
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02267 COX6B; cytochrome c oxidase subunit 6b

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05325805_05330265.mRNA False 3100 mRNA 0.34 3 5325575 5332874
TU110385 True 627 TUCP 0.40 4 5325519 5330846

Neighbor

gene id symbol gene type direction distance location
CI01000016_05313099_05322439 SLC2A3B coding downstream 2628 5312803 ~ 5322947 (-)
CI01000016_05249001_05286683 EPHB6 coding downstream 38892 5247560 ~ 5286683 (-)
CI01000016_05233964_05243756 NA coding downstream 81207 5233656 ~ 5244368 (-)
CI01000016_05208242_05218239 NA coding downstream 105759 5207419 ~ 5219816 (-)
CI01000016_05205373_05206602 NA coding downstream 118973 5205331 ~ 5206602 (-)
CI01000016_05374626_05378364 NA coding upstream 40971 5373845 ~ 5386465 (-)
CI01000016_05412782_05415867 NA coding upstream 79374 5412248 ~ 5415906 (-)
CI01000016_05426889_05429942 NA coding upstream 92902 5425776 ~ 5429942 (-)
CI01000016_05461674_05464777 FOXJ2 coding upstream 128800 5461674 ~ 5464777 (-)
CI01000016_05468882_05473383 ISOC2 coding upstream 135889 5468763 ~ 5473383 (-)
G97012 NA non-coding downstream 120762 5192792 ~ 5204813 (-)
G97139 NA non-coding downstream 134147 5191026 ~ 5191428 (-)
G97135 NA non-coding downstream 202099 5123080 ~ 5123476 (-)
G97045 NA non-coding downstream 252047 5067684 ~ 5073528 (-)
G97037 NA non-coding downstream 354795 4969389 ~ 4970780 (-)
G97148 NA non-coding upstream 8165 5341039 ~ 5341800 (-)
G97160 NA non-coding upstream 69269 5402143 ~ 5402369 (-)
G97165 NA non-coding upstream 78781 5411655 ~ 5411920 (-)
G97180 NA non-coding upstream 220421 5553295 ~ 5553986 (-)
CI01000016_04921091_04922518 NA other downstream 402171 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1394524 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1660262 3647653 ~ 3675585 (-)
G95070 NA other downstream 2339934 2985260 ~ 2985641 (-)
G94786 NA other downstream 3049300 2270836 ~ 2276275 (-)
G97341 NA other upstream 826112 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3555959 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3603915 8925960 ~ 8945229 (-)
G98679 NA other upstream 3902122 9234996 ~ 9239929 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G145544 NA non-coding CI01000028 null 2185836 ~ 2188146 (+)
tiger barb (Puntius tetrazona) LOC122360452 cox6b2,LOC107744291,LOC107598404,LOC107692571,LOC107549480,LOC108432349,LOC108270780 misc NC_056714.1 CM032083.1 13606607 ~ 13609407 (+)