CI01000016_05388832_05396460 (ZNF628)


Basic Information

Item Value
gene id CI01000016_05388832_05396460
gene name ZNF628
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5388832 ~ 5397080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05388832_05396460.mRNA
CGGTGGCTCAAAACCCAGAGCATCCATTCCAGTGTTTGGACTGTGGGAAGAGTTTTAAGTGGTCATCCAGACTGGCACATCATCAGAGAAGCCATAACAATGAGAGGCCATATCGCTGTAACATTTGCCCAAAGGCCTTCAAGGGCTCATCTGCCCTACTATACCACCAGAGGTGAGAGGTCTCATTCTGGAGAGAAGCCCTATAAATGTGATGACTGTGGTAAAGCATTCAAACGCTCTTCTCTTCTACAGATTCACCGCAGTGTGCATACAGGTCTTCGCACTTTCCAGTGCTCCTACTGCCCTTTGACCTTCAAATGGAGCTCACACTACCAGTATCACCTCCGCCAGCACACTGGTGAATGTCCGTACCCGTGCGACAGCTGCTCCAAAGCCTTCAAGAACTCCAGCAGCCTGCGTCGCCATAAGAATGTTCACCTGGGCTTCAAGCCCTACGTCTGTGATGTCTGCAATAAAGCCTTCAGTCAGTCCACTAATCTGCGGCAGCACATGCGTGTACACACGGGAGAACGTCCGTATCTCTGTGGGGATTGTGGACGCAGCTTCACGCATTCATCCAACTTGGCGTTGCATCGCATCTCTCACGTAGAAGGAAAGGGGAAGAGTGCTGGGAAGTCCGGAGGGGCCTGTTCAGAGTCAGCAACTCAAGAGATGGAGGTGGTGCTGACGGAGGATTTGAACACTGTTGGGATGAGCATTTCTGAAATGGTGGGCCTTGTGGGTGGACAGGAGGGAGGAGTCGGACAGGTGTTCCTGTCCCATAATACGCCCTCGCCTGCTACCTCAGGCACAGCCAATCAGAACATTCTGCCACAGCTGACACTCACACCCACTTCCTCCTCTGTCACAGGCACAGAGCATATCCACATGAGCAAGACCGACACAGGTGCTAGTGTTTTGCTGTTTAGCTGTGGCAGCTGTAATGAGACATTTTCAACACAGAGTCACCTTGAGGCACATCAGACTCTACACCTAGATAGCCTTGGTCCAGCAGGCGGTGGAGAGGTTGTTACAGAAAATAGCACAGAGGCTGAGGGAGGTGGGGTGTCACTGGTGGGGGCTACACCATTGTTGGCAGACTTTGAAGAGGTTGTTGAAACCACCGCAGTTGCAGATAACGGTCAGGGGGCAGAGTTACTTGGCCTGGATGCGGTTAGAAATGAGTCAGGGCAGGCACAGTATGATCTACTTCAGACCTTCACTGCGTCTGTGAATCAGATGTCCACTGAGACCAGTGTGCCAACTGCACAAGCTACAACAGAATGTGCCTACTGTGGGAAGAGTTTCAAGACCAGCAGTGGACTGACCAGACATGTGGCTCAGGCCCATCCTCTCGCTCTGTCAGAGTCGCGTTCTCAGTTCAACTGCTCGGCATGTGACCGCTCCTTTCCTCTGCTCTCCTCTCTGCTCAACCACCAGCACTCCCACACTCCTGAGCAGAGGCTGCTTGCTGAGGCAGAAGCGGAAGCAGAGATTGTCTGTCCCTCTCTCTCACTGCCCCTGCCCTCCTTGAAAAGAGAGGGAGAAGATGGAGAGAGAGAGATCCATGTCAGTCTAATTGCTGTCACTGAGGAGGGAGAGAGACGAGCTGTGAAGCCATCTGCCAAAGCATCAGGGAAGGGAAGCAAGAGAGGTGGAGGTAGCAAGACATCTGCCGCAAATAATGGTGTGCGGGCTTTTCAGTGCCCCTACTGTCCGCTGACCTTTAAGTGGAGCTCACACTACCAGTACCATCTTCGCCAGCACACCGGTGAGAGGCCATATGTGTGTCAGGAATGTGGCAAGTCTTTTAAGAATACCAGCTGTCTCCGTCGCCACAGTCAGCTCCATTCTGGCCTACGTCCACACGCTTGCTCTGTGTGCGGTAAGGCTTTCTCTCAGACCTCCAACCTCAAGCAGCACGAACGGACACACTCTGGAGAAAGGCCCTTTCAGTGCTCTCAGTGCCACAAGAGCTTCACCCACTCATCCAATCTGCAGCTGCACCTACGCACACACTCCTCGCGCAAGGACTTCAAGTGCCAACACTGCGGAAAAGAGTTTGTCATGCTCTCCTACCTGCAGAGGCACTTGAGAACTCACAGTTCTGGGGGTGCAGTAGCGTGTACAAAGGAAGCAGGAAAGGTGGCTAAAGCATCCAATACAAACACTCTTCCCACCCCTTCAGAACCACAGACTCTCCCCTTAATGCAGACCATTCAGGCAATGCCCCAAGTTCTTGCGGCACCCCAAACTCAAATTCAGCAATTTCAACCAGTTCAGACACAGCAGAGATTTATTTTGACCAATAATAATGCTCCCCTCATCACTGCCCAGCCTCAAAGCACATCGACGATTGCTCGTCCTATTTTAGGAAGCCTCGGTCGTAGCAGGAAAGGTGGAACTAGACGTGGACGGAAGCCTAAAGCTGCTACCCCAAAATCCCCTCCTACTGTTCAGACCACACCAATCAAGCAACCATTAATGTTGTCAGCTGCAACTTCCTCATCTACTACGACATCCAGTGCCACTTCTGCTGCTTCTGTAAAGACAGAGTACCCGCAGCTTAATTCTAACAATCCACTGGCTGTGTTGCCTGTCAGCACTAGCCAAGTACCTGAAAGTCCTTCTGTCTCTGCAGTTAGCATTATGTCGGTGACGCAAAACTCTACACTAACAAGCAGTTCCACTGTGTTGAGTGGTGATCCTGAGAGTGTTCCAGTCGAGGCGAAAGCTGTTGAAGAAATTCCAAGGGAGCGTTTTGTTCTGTGCCTAAAGAAAGAAATGGAGAATGGAGATCAGGGAGATGGGATGGAGGTGAAGGTGGAGATGGAGGGAGGGAATGATGCAGGGCAGTCTTATGTCTTGCAGATTGAAGGTGAGGGCCAGGAAGAAGAGGGAGGGAATAGTGAGGGAAGAGAGAAGTCATATGTACTCCGGTTTCAGACAGAGGGAGAATGTGAGGGAGATACAGGAAAAGAGAAGACTGAAATGGTCTCTCTTAACTTACTCCAAGAGTGGACTGGACAGAGTGAAGGGCATGGAACTGCAAATGCTGAGGGAAATGTTGAAGTAGAGAAGTCATTTGTGCTTCATTTCCAAACAGAATCTCCAGGTGAGGAGAACATTCAACCAGGCTCAGGCTTCATAGGAGGCCCAGGTGAGGATCTCGACCTTTCTTGCCACCCGGGTCAAGCTTTGGTGCCTCTGGAAGGGCAGGATGTGGTGTTTGAGCTTGGTGACGAGACAAAAATTGATGAAAGCACAGGGCCAGGGGACAGTGTTCAAATGATTGCACTGATAGAAGATGAGGACAATGGTTCTGGGGCAAGGGGCAGTTTTAAAGGTGCTGTTGGGGCAAACTCTGGGCAAATGGAGGGAATCTTCCAGTTAGAAGGAGGTGAAGGCATTGTTATAATTGAAGTTAGCACCAGCAGTCTGAGAGAGGGTGGAATAGAGGCAGCAGATGTAGGACATAGGTTAGTGGAAGGAACTGAGGAAAAGCAAAATAATGATGCACAAGGGGTACGAGAGGAAGTAATGGAAGAAGAGTCAAAAGTTGCTGAGGCTGAGAGCATATCATCATCAGAAATGGGACTGATTGGAATTTAGGACTGAGTATGGAGTAAATTTAACTAGCTTTAACACAATTCACACCTCATGACAGTTTCACATGCAAAACTACCAGTGGCACGTGTTTACCAGATATCCAAACTGCTTTAATTTCAATGGTTCTGTCATTATAAAGTGTTTATTTTGAACTGCGATTTAATGGTTTTAAAGATTAGGAAGCTGATGACCATGTTGTAGCTGTAGGACCGACAAAGGACCTGTTTTGAATCTTACATAAATCATTTGAGACTTGTTTGTTGCACACATAGACATCCTTAGAACACCACAGTGTCTTCTACCTAAGCTGTTGTCCCCCCCTAAGACTGCACTTTGTGGGGATAAAGCACATTGCGGTTGTTCACCTGGCCCCTACGGGGAGCTGTTTCACAAACCACAATCATCGAATCCAGCCCAGCCAAAAACAGTGGTTTCTAAATGAAGAAAATCCCTGGTGTTCTTCTACATTCAGGGTGCACTGAAAAGAGAATTTATAAACTAATATGAAATATGAACTATATTCAGCTATGCTGTCATGTTGACAGTGACTGTACAAAGTGAACTTTTGTAAATATGTCTACTCTGTTTTCATTCTTAATATTGGTACTAGATGGCAATTACCA

Function

symbol description
znf628 Orthologous to human ZNF628 (zinc finger protein 628).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05388832_05396460.mRNA True 4232 mRNA 0.49 6 5388832 5397080

Neighbor

gene id symbol gene type direction distance location
CI01000016_05381573_05383796 NA coding upstream 5014 5380917 ~ 5383818 (+)
CI01000016_05335334_05352325 RASIP1 coding upstream 36165 5335334 ~ 5352667 (+)
CI01000016_05229439_05231984 NA coding upstream 155673 5229339 ~ 5233159 (+)
CI01000016_05192890_05204267 TPI1.S, TPI1, TPI, TPI1B, TPI1A coding upstream 184073 5192782 ~ 5204759 (+)
CI01000016_05117302_05122058 GNB3A, GNB3 coding upstream 266120 5115426 ~ 5122712 (+)
CI01000016_05398036_05400369 NAT14 coding downstream 956 5398036 ~ 5400406 (+)
CI01000016_05405791_05407797 AICDA coding downstream 8711 5405791 ~ 5407963 (+)
CI01000016_05445824_05454816 EPN1 coding downstream 48744 5445824 ~ 5455416 (+)
CI01000016_05475350_05482964 U2AF2, U2AF2A, U2AF2B coding downstream 78270 5475350 ~ 5483946 (+)
CI01000016_05488887_05502270 CACNG6B coding downstream 91807 5484205 ~ 5504239 (+)
G95824 NA non-coding upstream 13565 5371328 ~ 5375267 (+)
G95814 NA non-coding upstream 59174 5327611 ~ 5329658 (+)
G95793 NA non-coding upstream 62917 5233196 ~ 5325915 (+)
G95871 NA non-coding downstream 14402 5411482 ~ 5411703 (+)
G95803 NA non-coding downstream 15158 5412238 ~ 5418215 (+)
G95876 NA non-coding downstream 24087 5421167 ~ 5421768 (+)
G95880 NA non-coding downstream 28289 5425369 ~ 5434373 (+)
G95801 NA non-coding downstream 60762 5457842 ~ 5458207 (+)
G95792 NA other upstream 162891 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 552177 4829592 ~ 4837457 (+)
G95648 NA other upstream 1114927 4272636 ~ 4273905 (+)
G95439 NA other upstream 1524975 3862175 ~ 3862305 (+)
G93406 NA other upstream 4461300 905400 ~ 927532 (+)
G96389 NA other downstream 1763561 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2386985 7783987 ~ 7784996 (+)
G97824 NA other downstream 2617283 8014363 ~ 8015775 (+)
G98288 NA other downstream 3599018 8996098 ~ 9002717 (+)

Expression


Co-expression Network