CI01000016_05405791_05407797 (AICDA)


Basic Information

Item Value
gene id CI01000016_05405791_05407797
gene name AICDA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5405791 ~ 5407963 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

Function

symbol description
aicda Enables cytidine deaminase activity. Acts upstream of or within somatic cell DNA recombination. Predicted to be active in cytoplasm and nucleus. Is expressed in head and intestine. Human ortholog(s) of this gene implicated in hyperimmunoglobulin syndrome and immunodeficiency with hyper-IgM type 2. Orthologous to human AICDA (activation induced cytidine deaminase).

NR:

description
Aicda protein

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K10989 AICDA, AID; activation-induced cytidine deaminase

RNA

RNA id representative length rna type GC content exon number start site end site

Neighbor

gene id symbol gene type direction distance location
CI01000016_05398036_05400369 NAT14 coding upstream 5385 5398036 ~ 5400406 (+)
CI01000016_05388832_05396460 ZNF628 coding upstream 8711 5388832 ~ 5397080 (+)
CI01000016_05381573_05383796 NA coding upstream 21973 5380917 ~ 5383818 (+)
CI01000016_05335334_05352325 RASIP1 coding upstream 53124 5335334 ~ 5352667 (+)
CI01000016_05229439_05231984 NA coding upstream 172632 5229339 ~ 5233159 (+)
CI01000016_05445824_05454816 EPN1 coding downstream 37861 5445824 ~ 5455416 (+)
CI01000016_05475350_05482964 U2AF2, U2AF2A, U2AF2B coding downstream 67387 5475350 ~ 5483946 (+)
CI01000016_05488887_05502270 CACNG6B coding downstream 80924 5484205 ~ 5504239 (+)
CI01000016_05698858_05706081 NA coding downstream 290895 5698858 ~ 5706719 (+)
CI01000016_05797506_05798075 NA coding downstream 389543 5797506 ~ 5799585 (+)
G95824 NA non-coding upstream 30524 5371328 ~ 5375267 (+)
G95814 NA non-coding upstream 76133 5327611 ~ 5329658 (+)
G95793 NA non-coding upstream 79876 5233196 ~ 5325915 (+)
G95871 NA non-coding downstream 3519 5411482 ~ 5411703 (+)
G95803 NA non-coding downstream 4275 5412238 ~ 5418215 (+)
G95876 NA non-coding downstream 13204 5421167 ~ 5421768 (+)
G95880 NA non-coding downstream 17406 5425369 ~ 5434373 (+)
G95801 NA non-coding downstream 49879 5457842 ~ 5458207 (+)
G95792 NA other upstream 179850 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 569136 4829592 ~ 4837457 (+)
G95648 NA other upstream 1131886 4272636 ~ 4273905 (+)
G95439 NA other upstream 1541934 3862175 ~ 3862305 (+)
G93406 NA other upstream 4478259 905400 ~ 927532 (+)
G96389 NA other downstream 1752678 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2376102 7783987 ~ 7784996 (+)
G97824 NA other downstream 2606400 8014363 ~ 8015775 (+)
G98288 NA other downstream 3588135 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 4387668 9795950 ~ 9842576 (+)
G95845 NA non-coding upstream 147702 5256601 ~ 5258167 (+)
G95844 NA non-coding upstream 148969 5256515 ~ 5256900 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location