CI01000016_05475350_05482964 (U2AF2, U2AF2A, U2AF2B)


Basic Information

Item Value
gene id CI01000016_05475350_05482964
gene name U2AF2, U2AF2A, U2AF2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5475350 ~ 5483946 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05475350_05482964.mRNA
ATGTCAGATTTTGACGAGTTTGAGAGACAGCTAACCGAAAACAAGCAAGCGGACCGAGACAAGGAGAACAAGCACCACCGGCGTAGTGGTTCGAGAAGTCGTAGTAGAGACCGGGACAGGAAGAGAAGGAGCCGGGACCGAGACAGAGAAAGGAGAGGCAGCCGAGAACGTCATGGAGATAGCAAGGACCGCAGACACAGACGCAGTCGTTCTCCACACCGGGAGAAGAAAAAGATTAAAGTGAAAAAATATTGGGATGTTCCTCCTCCTGGATTTGAACACATCACACCCATGCAGTACAAAGCCATGCAGGCTGCTGGTCAGATCCCGGCCACTGCTCTGCTGCCCACAATGACCCCTGAGGGTCTGGCTGTGACCCCAACACCTGTTCCTGTCGTGGGCAGTCAGATGACTCGACAGGCCCGGCGGCTCTACGTGGGCAACATCCCATTTGGCATCACAGAGATGCGTTTGGGTGGCCTGACTCAGGCCCCAGGAAACCCAGTCCTTGCTGTCCAGATCAACCAGGACAAGAATTTTGCCTTTCTAGAGTTCCGCTCGGTGGATGAGACGACACAGGCCATGGCATTTGATGGCATCATTTTCCAGGGACAGAGTTTGAAGATTCGCCGACCACACGACTACCAGCCTCTGCCCGGCATGAGTGAGAATCCCAGTGTCTATGTCCCAGGCACGTCACTCTTTAGCTCCCCCAATTCTTGCGTTGTTTCCACTGTGGTGCCTGATTCGGCCCATAAACTCTTTATTGGCGGTCTGCCAAATTACCTCAACGATGACCAGGTCAAAGAATTGCTGACATCGTTTGGTCCACTAAAGGCCTTTAATTTGGTCAAAGACAGTGCTACAGGCCTTTCTAAGGGCTATGCCTTCTGTGAATATGTTGACGTCAATATCAGTGACCAGGCCATCGCGGGGCTAAACGGGATGCAGCTGGGGGACAAGAAACTCCTGGTCCAGAGAGCAAGCGTCGGCTCCAAGAACACCACACTGACGGGTATAAACCAGACCCCAGTTACCCTTCAAGTTCCAGGTCTCATGAACAGCTCGATGACTCAGATGGGTGGCATTCCCACAGAAGTATTATGTCTGATGAACATGGTGGCCCCAGAGGAGCTGCTGGATGATGAAGAGTATGAGGAGATTGTGGAAGACGTCAGAGACGAGTGCTCTAAATACGGTCAGGTCAAGAGCATCGAGATTCCACGCCCTGTAGACGGCCTGGAAGTTCCTGGCACTGGAAAGATCTTTGTGGAGTTTATGTCAGTGTTTGACTCTCAGAAGGCAATGCAAGGCTTAACAGGAAGGAAATTCGCCAACAGAGTGGTGGTGACTAAATACTGCGACCCTGATGCCTATCACCGCCGCGACTTCTGGTAGAGACTGGACAGAATCGAGAACGAGAGAGACGCAGATGGTGTGATACCAATCTCTCGGAAACCCCTTATTTTGTAGGTTTATGAGGTCTGAGATGGTTTGAGCTTTTTTAAAAATCTGGCAGACTAAAAACATGACTTGTGATTGGTCAAAATGTAGCGAACCAATTATTTGTCATGTTTTTTTTGTTTTTGTTTTTTTTGATGGTAACATTGAAGTATGTGCAAAGCTTTAAGATGGAAAAATGGACCGTACTATGTCATTGTCTACAGAAAAGGATACAATTAGACATGCCACTAAAGTTCCAGCTTAATTTTGGCCCATTGTGATTTTACGTGTCAGTTTTTTTCTCAATGTTAAATACCTGCTCTATCATCTGTACAGCTCACACTTTGAGCCAGACTGGTCAGATAGGAGTGAGAGGAGGATGTAAAGGAGCAAGTGAGGGAAGAGAAATGATGACAACAACAAAAATGAATGTTACACTCAAACGAGAAGGTGAGAGGGGGTATTTGAGGAGAGAAGTGTGTTATTTGAATATGTTTTTTATTTAGGCTGTGAAAGAGGTTTCCTGTGTAAAAATGTAGAGTTTAAAAGGCCAGAGGAGTTTCTGGGTTGTTTTTTGACACCACACATGTATGAGGTAAAGCCGCTACAGGCATCTATCTTGTAGAGGGTGAATATTACCAATGAAGTCTATACTGTCTTCTATCTCCCCCCTCCTCTCTTTTTTCCTGCTATCTCTCCTTCCTTTTATAATAGTTGTACTGTTTCTTGTGAACCCTATTTTCCTGGCCCCATCTAACCAAATTTATACACAGTGAAAAAGAAACTTGTCTCTTCTTTTCTTTGTTTTTTTTTTTTTTCTTTCTTTTTATACATTCTGTATCTAACTGTCCACTGCTGTTTTTTTAAAACTGTAATAAGCTGAGTTGATTTAATACAGTGCATTTATGTATGAGGACCAGAGAAACAATCTGGTGAA

Function

symbol description
u2af2b Predicted to enable poly-pyrimidine tract binding activity and pre-mRNA 3'-splice site binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type prespliceosome; U2AF complex; and commitment complex. Predicted to be active in nuclear speck. Orthologous to human U2AF2 (U2 small nuclear RNA auxiliary factor 2).
u2af2a Predicted to enable poly-pyrimidine tract binding activity and pre-mRNA 3'-splice site binding activity. Predicted to act upstream of or within RNA processing; cell differentiation; and female sex differentiation. Predicted to be located in nucleus. Predicted to be part of U2-type prespliceosome; U2AF complex; and commitment complex. Predicted to be active in nuclear speck. Orthologous to human U2AF2 (U2 small nuclear RNA auxiliary factor 2).
u2af2 Enables enzyme binding activity and pre-mRNA 3'-splice site binding activity. Involved in mRNA splicing, via spliceosome; negative regulation of protein ubiquitination; and regulation of RNA splicing. Located in nuclear speck. Part of U2-type prespliceosome and U2AF complex. Colocalizes with Prp19 complex.

GO:

id name namespace
GO:0000243 commitment complex cellular_component

KEGG:

id description
K12837 U2AF2; splicing factor U2AF 65 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05475350_05482964.mRNA True 2380 mRNA 0.46 11 5475350 5483946

Neighbor

gene id symbol gene type direction distance location
CI01000016_05445824_05454816 EPN1 coding upstream 19934 5445824 ~ 5455416 (+)
CI01000016_05405791_05407797 AICDA coding upstream 67387 5405791 ~ 5407963 (+)
CI01000016_05398036_05400369 NAT14 coding upstream 74944 5398036 ~ 5400406 (+)
CI01000016_05388832_05396460 ZNF628 coding upstream 78270 5388832 ~ 5397080 (+)
CI01000016_05381573_05383796 NA coding upstream 91532 5380917 ~ 5383818 (+)
CI01000016_05488887_05502270 CACNG6B coding downstream 4941 5484205 ~ 5504239 (+)
CI01000016_05698858_05706081 NA coding downstream 214912 5698858 ~ 5706719 (+)
CI01000016_05797506_05798075 NA coding downstream 313560 5797506 ~ 5799585 (+)
CI01000016_05828974_05833309 JOSD2, JOS2 coding downstream 344452 5828398 ~ 5833377 (+)
CI01000016_05837368_05837667 NA coding downstream 352637 5836583 ~ 5837927 (+)
G95804 NA non-coding upstream 8367 5466670 ~ 5466983 (+)
G95885 NA non-coding upstream 12093 5463028 ~ 5463257 (+)
G95884 NA non-coding upstream 12426 5462718 ~ 5462924 (+)
G95805 NA non-coding upstream 13208 5461890 ~ 5462142 (+)
G95801 NA non-coding upstream 17143 5457842 ~ 5458207 (+)
G95831 NA non-coding downstream 10295 5494241 ~ 5494914 (+)
G95888 NA non-coding downstream 12697 5496643 ~ 5496842 (+)
G95889 NA non-coding downstream 14322 5498268 ~ 5498957 (+)
G95890 NA non-coding downstream 15412 5499358 ~ 5499655 (+)
G95792 NA other upstream 249409 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 638695 4829592 ~ 4837457 (+)
G95648 NA other upstream 1201445 4272636 ~ 4273905 (+)
G95439 NA other upstream 1611493 3862175 ~ 3862305 (+)
G96389 NA other downstream 1676695 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2300119 7783987 ~ 7784996 (+)
G97824 NA other downstream 2530417 8014363 ~ 8015775 (+)
G98288 NA other downstream 3512152 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 4311685 9795950 ~ 9842576 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009762 u2af2a coding NC_007127.7 CM002900.2 12812214 ~ 12821768 (+)