CI01000016_05488887_05502270 (CACNG6B)


Basic Information

Item Value
gene id CI01000016_05488887_05502270
gene name CACNG6B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5484205 ~ 5504239 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05488887_05502270.mRNA
ATGGCACAGATCAAACAGGCTGGGCTAAAGTGGGCCGGGTTATGCGGGTTCTTAAAAAAGAGGAATGCGTCATCTTTTCACAACTCTATAAGGCCTCAATCCAATGTCTCTCATCAAGTCGTTCTTTTCATCTACCCATTATTCCTGTCTAGTTTGTTATCAAACCTTCTCGCGTTTGTAGGCTCATTTCTGTTTGTCCCCTTTCTTGACTGTGCCTCTGGGAGTTTTCCTCTCTTATCTCAAAGCTTTGTGTCCGCCATGTGGTCCAACTTTTTTTTGCCACAAGAAGAGGATGGGAGAGTAGGTGGACCTGGCAGTAAGAGCGGGCGTGCAGGTAAACGGCCAAGGCCCCCTCGAATGAGTGACAGCCAGGAGGGCAAAATCAAGCTGGCATTTTTCATCGCCCTCATAGGCGTGACTCTGACGGTACTTGGCATGGGCACAGAGTTCTGGGTGGAGGTATCCCAGCCAAAACACTTCAGGAACAATCAGACGTGTGAGATGGCACATTACGGCCTTTGGAAATCATGCATTCGCACGCTATGGGTGTCAGATATTGACCCAGAGAGAGAGAGCTGTGGACCTGCAGAACTGCCTGGAGAATCAAACTGCACATTCTTTAAATTCTACACTTCTGGAGAGAATGCTGTCATATTTAAGAAAACGACACAAAAAAGTTTGCATATAACAGGTGCAATGTTGGCTTTGTTCAGTTTGTTTCTGATGGTCATGGGCTCTCTGTGTATCACTATGTCTCTCAGTAAGAGTGTGCCCTTCTTCCTCAAGCCTGCTACCATCTGCTTCGTCTTCTCAGGTATCCTGGTACTGTTGTCCATCATTGTTTTCCACCAGTCTGTGCTGGCTTTATTGGCAAGTGATCACAGTATCCCTCTCCATCACGAGCTGTCCTGGTCAGTGGCTTGTGTTGGCTCGGCTGGGGCCATTCTCATTTTTGGAGGGCTTATGTTCCTGTTGCTTTCCCTCCCCTACAACCCCTTGGACAAATGTTTTGGTCAGCAGAGCAGTAGTGATGGCTAGCTGTCAGAAGGACTGCCAGTGAGTTAAGTAGCAGAAGATCTTTTATACTCTTATGCTGCCTGTGGAGATTAACTGATGTT
>TU108966
GAAAAAATATCAATGAAATATGTTGATTACCGATACTCATGTGCTTCTTTGAGCTGATTGGAAATTATCAAATACAGAGAATTAGAGATTATGAGGAGCAGAATGTGCTTCACAAGTCCAGGAGTATGAAATTGAATAAAGTGCTCTGCGGAAATTGGGGGAAAAAAGCTGTTTAGTGGGTGGTTAATTTTAATAGAATATAATAAACTTCTTTTAGCAGCTTGGCAAGGGTATATGAATATAATTTTATTTTTTATTATGTAGAAAACAAATTGCATAACTAGTTAAAACATGATCTCCTAGTCTCAGTCATCAGTGGCACAACTACGGACCATCTGATGCATGTTGTGAAAAAAGTTCTGAAAATTTATTCCAAACCTGTTGACCAATACTTTATAGGGAGCCAGGAAAAATTTGTTCACAAGCTCAACAGTAAGGATTTTTTATTTTTTTTTAAATTTTTTTATAAATCTTCTGGTTCAGCCAGTTCAGTATTTCTGTTTACTATTTATGTGCCCTCCCACAGAAGAATGGACCATTTTAATGTTTTTTTTTTTCTTTATATAACTAGTTTTTATTTTAAACTTTGTTTAGCAAAAAAAATTGCACCTGGAAATTAATCACCTGCAATGTCAATAAATTAAACACTTTTGCAGGAAAACAATGGCATATGGTGCGAGACATACTGATAAATTTTTAGTTTTTGCAAATTTGTTAAGACCTCATCTATGTTAGCCAGCTAGATAACATTATCATGGTAACAAATCAGCAGCTTGCAATGTTGAATGCAGTGTTGGGGTGACGCATTACAAGTAACGCGAGTTATGTAATCAGATTACTTTTTTCAAGTAACTTGTAAAGTAACAAATTACTTTTAAATTTACAACAAAAGGTCGGAGTTACTTTTTCAAATAAGTAATGCAAGTTACTTTGTTTTCCCATGTATTGACAGCTCTACTGTCCCCATATTGAGAGAAATTGTGAGTACAGAAGCGTTGTGTGCGCTGTGTGAACATGATGGTTATTCTAGACTAGACTAAATGTGAGCATACATTTACTCATTTACTACTACTCCTGCATCCTATTCTTCTGTATTCCAGAATGGCAGCACAGCTGAAAGGCTTGTTTGTTTGAGCTGCGCCCTCTACTGTACAGGCGTGAATTTGCATTTCCTTCAGCCTAAGGGTTATTCATTTCACTTTTGGTGTGGAAGGGCCTGTACATTTGCCAAAAATAGAACCTTTTTTTTTGTTATAAAAACAAACAAACAGCCCAGCCCAGATGAGAAAAAGTAACGCAAAAGTTAAGTAACACATTACTTTCCATAAGAAGTAACTAACGCAATTAGTTACTTTTTAGGGAGTAACGCAATATTGAAATGCATTACTTTTAAAAGTAACTTTATCCCAACACTGGTTGAATGTGACGTTAATGGGACCAAGTCTTAGCAAGTATATAATATACTCAAGTGTAGTTTTATATTCTGCTTTGTTCAGTGAAATAGTTCTCATTACTTTGGAGAGATCACAAAGACTACAAATATTTTCTACTGATTTATTCAGGGCTGTATCTAAAAGCATTTATGGAACGGAAATGGCTTTATATGAATAAACTACTACTAATGAATGAATAGACACATGTTCTGTTGGCTTATTAGTGACCATCTTTATGGCTTCATTATTTTTGATTTTCACCTATGCCCCAATATTATGTCTTATAGCCAGCTCTCTAACCATCTTTATTATCACCTTTTTTCTTTCTCGCACATCATCTTTGATTTAATGCCATTATAACTTTCTAAGCTGCCCTATCAGCTGCTCTCTCTTTCCTTATAAACAGTCCTCTCTCTCTTTTCTGTCTTTGCAACTGTAACTCCCACGCTTTTAATGTCATTAACAGGTGCTTGTCCAAAATAGACCCCTTGCCTGTACGCGCACACGCAAACATCCATGGATCAGCTGACATACACCCGACTTTATTTCTCACACACATGCAAAACTCACACTGACCTACACTGAAAAATTAAAAATCTCTCCCTGCATAGAAAGCTCTTGCTTGGACCATCTACTCGTGCTTAAGCTGTCATACATTAAAAGTATCTTCAACTTGATTGCATGAGCCCCAGTCCCACTTTTCTCCACCCTCTCTATCTCTTTTTTTTCTCTCTTGCTCTCTTTGCGTCCCTCCTTCTACTCTCTCAGTTGAGTTTCATGTATCTAGTCATCAGATCTGCACCCACACAGAACAGGTCAGGATTTGATTGCTCTCACTGTTGCTAAAGCTTGATGGCTTTTCAATGCACTTACTGCACACATGCATACTGTCATAGTTTAATAAAATCTGTGACATAAGCCTTAAATTTAGTAGTTTTATGTTGTGCAGCTTATAAAATTATTTTATTATGCTCTCAGGAAGAGTGATTGCACATTTGATAACTTTGCAAATTTTATTTATTTTTGTCTAAAAATCAGAATCTAAAATGCATGGATGTATTGATATAAGTATAAATGTATTATTTCTGAACTGCTACATGTGTAAATGAATTTGTATATTAACCTGAATTTTAAAAATTATTTATAATTTATAATTTTATTGCATCACACAATCACAACACTGTTAAATATTTGACATGAAGTGTCATCAGTTATGTTTGCATATGTCTAACTGTCTGATACACTATAAACATTTAGGCAGTTCCATTGGTCTGGATGTAATTTTTTGTGATGAGAGATGTTTATACATGGCTTCTGGAGTCTGTATAGTAGATCTTGTGTGTGAGTTTTGGGGCTGAAACCCTGTTACTTTAAAATGACAATTGGTTTCTTTTATTCTGGCTGACAATTTGTCTCTTGACTGAGATGTGAGCCCCTTAGGAATGGGTGTAGACTTTTTCCTTTTGAGGCAACAGCTAGCAAAGTATAGTATACATATTATATAAGCGTAACTGTTTTGAAGAAAGTTTTGACAGAGTTGGGGTAATTTAAAGAGCTGCGATGGAGGTGGAGATGATCTTGGTGGGTTAATTATAGCCTGTGTTACATTTCCAGGTCATGTTTAGTGTTTTGACAGTTATATCTCAAATGACTGTAACTTAAAAAACATAAAATGGCCCCCAAAACTTTTACTGAATAACTAGTTATTATATCTATGTGTAGTCACACTGCAAATTTCGTATTCTGGATTTTTATCTTGTTTTCCAGTGAAATAACAGGCTTGTTTTCTGATATAAATTGACTTAAAGCTGAGTATTTGGAACTAAGTTCATTTTTCTCACCTCATTTGCATTTTTATGTTTTATGCGTATTGTATTGTATTAAATGTAAGATTTTATTATGTTTTTGAAAGAATTATTTTATACTCAGCAAAGCTACATTTATTTGTTCAAAGCAGTAAAAACTGTAAAATATTGTAAAATATCATTTTTATTTTGATGTGACACTGTCTTTAGTGTTGCAGGATCCTTCAGAAATCATTTATGCTGTTTTGGTGCTAAAGAAACATTTCTTATTATCAATGTTGAAAATAGTTGTGCTGCCTAATATTTTTGTTTTGTTGTTATTGTGGAAAGTGTTTTTTTTTTTTTTTTGGAGTTGAATGGATGAATAGAAAGTTTACATAATCTATGTGAAAAAGACATTTTACATTTTGTAACAATGTAAAAGTCTTTAGAGTTACTTTGGATAAGTACTTTTTGTAAAACTATCATTGTCTTTAAAAAAAAAAAAAACAGTAGTGTATACTTAAACTATTTGCCTCTGGGCTAAGAAAAATAAAATTAGTTCAATATTCTCTGTAATTTTGCATAAGTAAAGTTATCTTGTAACTTATTTTAACATATTATTATTATTATTATTATTATTATTAAAGTTGTTTATTTTTGTTGTGCTGCTAAAAATGCTAATTTTGGTTAATAAAGACTATTGCCTGGTTTCACAGTCAGGGCTTAGATTAAGCCAGGACTAGGCCTTGGTTCAATTAGGACATTTAAATAGCTTTTATAAATGTGCCTTGGAAAAAAAACATTACTGGTGTGCATCTTGAGACAAACAATGTCACTGACATATTTTAAGATATGCCAGTACAAGTTACTTTCAGTTAAAACAGCTCAAACATGCATTTTAGTCTGGTACTGGGTTTAAGCCTTGTCTGTGAAACGGGGCATATTTTTAATAAGATATTCTAATGTCTTGAAAGTTAAAAAAAAAAAAATGTTTAAATATCATTTGTTTGTACTATATTTTACAATACATATATGTTTGGAGATTTATTGTAGCTATTTCAAACGTGTCTGCCGTGGCATGTTTGTGAGTTTATCATGCTATAATTTTGGCTATGGGGCACATGCTTGTTTCTTGCCTTGTGTTTTTATTGCTCCTCTGTGGGTGATTGGCTTCAGTGAGCCTTGTCCTGTAGTACTTCCTCTGTCTACAGGGACAGTGATAACGACTTTAGACCCTCTGTTGGTTTGCCTGTCACACATGAATTAACACCTGCTGCTCCACCTGGCTCTACTTTTCGCATTCATTCTCAATCAACCTTGAGTCTGTGCAGTCCACATTAAACTCTTCCCGCTCTCGCGTCTTTTTTTAGAATAGCAGAACGCCGAACACCTTGAAACTCTCTGTCCATAGATCTAATAGTTCTCTGTACACGTAATGCTCGGGTATTTATGAGGCCTTAAAATGGCACAGATCAAACAGGCTGGGCTAAAGTGGGCCGGGTTATGCGGGTATGTGTTGTTATCTTGGAGTCGCATCTGGCATGGCTAATTCTAAGACAATGTGACCTAATTGTGACCCATACTAACCCTCTCTGAAAGCAAGCTGCCTGGGTGCTTATTGAACAGAGGACAAAGGTATAACTTTGTTTTCCATGTATTAGGGTGTTCGCTGTCTACTAACTCTACTAACTATAACAGC
>TU108987
ATGACCCTCACAGGGCTTACAGCAGAGAGCTCAAGTGCCTTTTTCTGTTTCTCTGACTGATTTTTATTCTTCACCTTCTCTGCCTCATTTTTCTTTCTCACTGTCTCATGTTTCGCCCTCAGAATCAAACTGCACATTCTTTAAATTCTACACTTCTGGAGAGAATGCTGTCATATTTAAGAAAACGACACAAAAAAGTAAGTTCTTCCTGTATACTCTGCCCTCTTTCTCTCTTTGCCTTCTATGTGTGATCCTCGTCTTTGCTCTCTCATCTATTCATTCTCTCTTCTTCCACACTGTTTCTCTCATTGAAAATCAGTCATGTGTTTCTGTCTCCTCCCACTGCTCCATGACTCTCCATCTCTCCACCTCCCATACATGCACAAGAATTATCATTCTTGAGCTCCTTTCTTGTTCAATTCTTATTTCAGTTTACACAATTCCTGAATGCCCCAACAAAATACACCCAAAATATCTCTTTTAACAGGTTTGTCAAG
>TU108992
CACACAGTGACACCTGTTAAGTAGTTAGCTAAAGTAGGAAGCACTTTTAAAAAATGTTGTAATTTATCGAATACAAATATAATTTTGCTCCTAAATGTTTCATGTTGAATCAAAATAGGTGAACTGTTCCTTTTAAATAAAATGACCTTTCATCTCTACTTTCCCCAGGTATCCTGGTACTGTTGTCCATCATTGTTTTCCACCAGTCTGTGCTGGCTTTATTGGCAAGTGATCACAGTATCCCTCTCCATCACGAGCTGTCCTGGTCAGTGGCTTGTGTTGGCTCGGCTGGGGCCATTCTCATTTTTGGAGGGCTTATGTTCCTGTTGCTTTCCCTCCCCTACAACCCCTTGGACAAATGTTTTGGTCAGCAGAGCAGTAGTGATGGCTAGCTGTCAGAAGGACTGCCAGTGAGTTAAGTAGCAGAAGATCTTTTATACTCTTATGCTGCCTGTGGAGATTAACTGATGTTATAAAGGACTCTCAAAAGCTAATGTTCATAATGTTTCACAATAACCTGCATTAGAATTGCTTATGAATAAGATTATAGACCCTAATACACATACACTGAATTTGAACTGATATTTCTATGATGGCTCTGTACATAAAATCAGTGACCAACAGATCTGTTTACTCTCTTTAAAGGCTTCATTTACACAACATGCTGAACATTATGCATTATTCATTTATCTGCATTGCTGATTTGTATAAGAAAGCTGATTTGATTATTTGGCATATATAACTGACTTCTGACTGATGGTTTCTGCGGGTTGAAAATGTAAAACAGTTTCTTTTTTAAAAAACAGGCCATCTTATCTGCGCTAAAGGCCTGTTCACACAAAGAACGATAACTGTAAATATAACTATATGATTAGTACCCACACCAATATGCATGATAACATTCTGCTTATTTTATGCGCGCTGCAGTTTTGTCATCTGCTGCTTTAAATGCTTGAGCTTTTTGATTGGCTGTTGATATTTTTATCATTCATCAGCTGGAAATTTTTTTCTGAAAATGATTCCAACAATATCGTTCCTCTGTGCACTTCCCTATTCTCGTAGAATTAAGGCCTGTTCACATCAAGAACAATAACTATAATGGTAACTATATTAGCATCCATACCAATGCATGATAATATTCTGTTTATTATAAACGGCGTGCTGCAGTTTTGTTGTCTGTAGCTTAAAATGCTCGAGCTCTTTAAAGTCACCATGAAATCAAAATTAATAATTTTTTTACAGAATATTGCAGTGCTTATTGTAAATGATTTATCCATGCGTACTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAATCATATGCCCTTGTAATCTTTAATCAAAAACGTTCAATTCACCTCCTCTTCGAAACGACGTCTGTTCTCTTCATGACATACATATGTCTCGGTGGAGGATGAGGCTAAATATCATGCAACTGATTACAAACTGGCGTTCAGATCTGCCTCTATTTAGTTAGCAACAACCAACTTCCTACAAACCAATCAATTCCCAAAAGACGAAATCAAATCCTGCCCTACATTTTTCTCATTCCAGAAGCCGTTTCACTCAGATTTACGTCACAATAGTTGGGTGGATTCTGATTGCCTGTCAATGTTTTTATCATTTATAATCTGGAAAAAAAATTGTTCTGAAAGTGATTCCAACGATACCCTTCCTGTGTCGTTATCGTTATAGCTAGCTTCCTTATTGTCATAAAAATAGAACTAGAATTAGAAATGTATTAAAACTTTATAGTTATAGTTATTATGGTTATAGTTATCACCTTTTTTTGAACGGGCCTTTAGATGGCTTGTGAACCATCGTAGCCATGCTGTTTACTAGCAAAACTTGGCAGGTGAGCTTCGTTGACCAGAATTATCTTTATGGTGAAGCTGGTTGACCTTGACCAACAAAGTCTTGCTAGTTAAGCTAGTTAAAAAGCCTAATGGGGACATCAGCACATTAGCATTACAACATATGCTGGTGACCAGCTACAGTGATCCCAAAACACTTTTGGACACATTTAAAAATGTGAAAGTAATTTTTAACATCTATTGTTTTATAAATCTAGCAACTTTTTTGTGCCATCTTTGTTTGATATTTTGCTATATAATGCAATGTTTATGCATTTAAATGTCCAAATACTTTTTGGGATCATTTTATACTGGCCTATTCTGCTGGGTTTTCAATTAACAAAGTAATCAGCAGATTAAATATCATAGATTTCCATGCATAGATTTAATTTACATTATATAAATGTAAAATAATGCTTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTTATTACTCACCCTCATGCCGTTCCACACCCGTAAGGCCTTCGTTCATCTTCG

Function

symbol description
cacng6b Predicted to enable calcium channel regulator activity. Predicted to be involved in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of L-type voltage-gated calcium channel complex. Human ortholog(s) of this gene implicated in aspirin-induced respiratory disease. Orthologous to human CACNG6 (calcium voltage-gated channel auxiliary subunit gamma 6).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04871 CACNG6; voltage-dependent calcium channel gamma-6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05488887_05502270.mRNA False 1118 mRNA 0.47 6 5488887 5502350
TU108966 False 4919 lncRNA 0.34 1 5484205 5489123
TU108987 False 497 lncRNA 0.40 1 5496007 5496503
TU108992 True 2361 lncRNA 0.35 1 5501879 5504239

Neighbor

gene id symbol gene type direction distance location
CI01000016_05475350_05482964 U2AF2, U2AF2A, U2AF2B coding upstream 4941 5475350 ~ 5483946 (+)
CI01000016_05445824_05454816 EPN1 coding upstream 33471 5445824 ~ 5455416 (+)
CI01000016_05405791_05407797 AICDA coding upstream 80924 5405791 ~ 5407963 (+)
CI01000016_05398036_05400369 NAT14 coding upstream 88481 5398036 ~ 5400406 (+)
CI01000016_05388832_05396460 ZNF628 coding upstream 91807 5388832 ~ 5397080 (+)
CI01000016_05698858_05706081 NA coding downstream 196508 5698858 ~ 5706719 (+)
CI01000016_05797506_05798075 NA coding downstream 295156 5797506 ~ 5799585 (+)
CI01000016_05828974_05833309 JOSD2, JOS2 coding downstream 326048 5828398 ~ 5833377 (+)
CI01000016_05837368_05837667 NA coding downstream 334233 5836583 ~ 5837927 (+)
CI01000016_05878037_05885761 FLCN coding downstream 375687 5878037 ~ 5886192 (+)
G95804 NA non-coding upstream 21904 5466670 ~ 5466983 (+)
G95885 NA non-coding upstream 25630 5463028 ~ 5463257 (+)
G95884 NA non-coding upstream 25963 5462718 ~ 5462924 (+)
G95805 NA non-coding upstream 26745 5461890 ~ 5462142 (+)
G95801 NA non-coding upstream 30680 5457842 ~ 5458207 (+)
G95811 NA non-coding downstream 16788 5519138 ~ 5528039 (+)
G95896 NA non-coding downstream 43389 5545739 ~ 5545986 (+)
G95897 NA non-coding downstream 43796 5546146 ~ 5546391 (+)
G95898 NA non-coding downstream 60965 5563315 ~ 5563610 (+)
G95813 NA non-coding downstream 62862 5565212 ~ 5566153 (+)
G95792 NA other upstream 262946 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 652232 4829592 ~ 4837457 (+)
G95648 NA other upstream 1214982 4272636 ~ 4273905 (+)
G95439 NA other upstream 1625030 3862175 ~ 3862305 (+)
G96389 NA other downstream 1658291 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2281715 7783987 ~ 7784996 (+)
G97824 NA other downstream 2512013 8014363 ~ 8015775 (+)
G98288 NA other downstream 3493748 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 4293281 9795950 ~ 9842576 (+)

Expression


Co-expression Network