CI01000016_05698858_05706081


Basic Information

Item Value
gene id CI01000016_05698858_05706081
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5698858 ~ 5706719 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05698858_05706081.mRNA
ATGTTGATAAAAGAATACCGGATATGCATGCCGCTCACTGTCGATGAGTACAAGATCGGCCAGCTATACATGATCAGCAAGCACAGCAGAGAGCAGAGCGGGGGAGGCGAAGGGGTGGAGGTCGTCCGTAATGAACCTTGCACAGACCACAAACACGGAGCCGGTCAGATCACAGAGAAACGCATCTACCTCAACAGCAAACTGCCAACCTGGATGAGAAAGTTTGTTCCCATGGCTTTTTATATAACAGAAACGGCCTGGAACTTCTACCCTTACACCATTACAGGAGTAAGGTGGAGTGTAGCACCTGTGTACATGTGAAGCAAATCGATAGTGCTTTTGTATTTAAATCAACAGAGCTGTTTACACCAGAATGCACATGTAATGTGTTACGCGACGTACTACTGGTATTACGCTACGCCATGACATACTGCGCTTTAGACGCAAGTAGAATCCATATAGCCGTTTGACCGGAAGCTAGATATTTTACTTTATAATGTGTTAAATATGGATATTTTTCTTGCACAAACGCATCACTTTGCTTCAGAAGGCTTTTATTAACCCCCCGGAGCCGTGTGGAGTACGTTTATGATGGGTGGATGCACTTTTTTGAGCTTCAAACAGGCACTGTCATTATAAAGCTTGGGAGCATCAGGGTGATTATTAATATAACTCCGATTGTATTCGCCTGAAAGAAGAAAGTCATATACACTTAGGATGGCTTGAGGGTGAGTAAATCATGAGGTAATTTTCATTTTAAAGTGAACTAATCCTTTAATGGGATGATGCCTGCAAGGACAAAATTGCAGTTCTCAGAAAACACAATATCATGAGTCACTCTGAGGTCCTTCTATGCATCAATAACCATAAAACTGCACAAATAACTGTAGACAGTTAAAGTTTTAGGTTGTAAAAACCTTTTTTTAACTGGCCTTCAGGTAATTTGAGACTCCTGCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05698858_05706081.mRNA True 959 mRNA 0.42 4 5698858 5706719

Neighbor

gene id symbol gene type direction distance location
CI01000016_05488887_05502270 CACNG6B coding upstream 196508 5484205 ~ 5504239 (+)
CI01000016_05475350_05482964 U2AF2, U2AF2A, U2AF2B coding upstream 214912 5475350 ~ 5483946 (+)
CI01000016_05445824_05454816 EPN1 coding upstream 243442 5445824 ~ 5455416 (+)
CI01000016_05405791_05407797 AICDA coding upstream 290895 5405791 ~ 5407963 (+)
CI01000016_05398036_05400369 NAT14 coding upstream 298452 5398036 ~ 5400406 (+)
CI01000016_05797506_05798075 NA coding downstream 90787 5797506 ~ 5799585 (+)
CI01000016_05828974_05833309 JOSD2, JOS2 coding downstream 121679 5828398 ~ 5833377 (+)
CI01000016_05837368_05837667 NA coding downstream 129864 5836583 ~ 5837927 (+)
CI01000016_05878037_05885761 FLCN coding downstream 171318 5878037 ~ 5886192 (+)
CI01000016_05891870_05892528 NA coding downstream 185151 5891870 ~ 5892679 (+)
G95933 NA non-coding upstream 45223 5649852 ~ 5653635 (+)
G95918 NA non-coding upstream 83368 5610878 ~ 5615490 (+)
G95915 NA non-coding upstream 90949 5607627 ~ 5607909 (+)
G95914 NA non-coding upstream 91515 5606703 ~ 5607343 (+)
G95913 NA non-coding upstream 92585 5605992 ~ 5606273 (+)
G96034 NA non-coding downstream 20126 5726845 ~ 5727075 (+)
G96035 NA non-coding downstream 25538 5732257 ~ 5732463 (+)
G96047 NA non-coding downstream 48919 5755638 ~ 5755894 (+)
G96048 NA non-coding downstream 49378 5756097 ~ 5756378 (+)
G96058 NA non-coding downstream 69341 5776060 ~ 5776310 (+)
G95792 NA other upstream 472917 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 862203 4829592 ~ 4837457 (+)
G95648 NA other upstream 1424953 4272636 ~ 4273905 (+)
G95439 NA other upstream 1835001 3862175 ~ 3862305 (+)
G96389 NA other downstream 1453922 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2077346 7783987 ~ 7784996 (+)
G97824 NA other downstream 2307644 8014363 ~ 8015775 (+)
G98288 NA other downstream 3289379 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 4088912 9795950 ~ 9842576 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location