CI01000016_05797506_05798075


Basic Information

Item Value
gene id CI01000016_05797506_05798075
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5797506 ~ 5799585 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05797506_05798075.mRNA
CTGGAATTCCTTGAAAGTCAAACCCTCCAAGTGAAGAAGTCTGCGAGGAGGAGTGCAGTGGATGGTGTGGATGTGGGTGAGCATGAGACAAAGTGTGAGGTGGTAGTTGCTGTTGTTGTGTTGGTGGCTGTTGAGGCTGTGATAGAGTGGTTGAGTGTCCATGAGTGTGTGAAGAATGAAGAGCAGGAGGTGGAGCAAGGGCTGAACTTGTTTCTCCTGCAGCTTGGCCCAGACCAAGACCAAGATGATTATGACTACCTTGCTGAACTAAAAATTGTTCTAGACTGGAATTGGCTGAACTTGAAGGAGATGGGGAAGAGGTCGGTGGCCCAGGGGAGGCCTGAGGTACTGACAGGCCTGGATGCAATGGGGGTGGTGGTGGTGGAACAGATGAGACCAGTCCTCCACTTGCACTACTGCTAGCAAAATGATCAAATCGCCCTACTCCTGAATGTAATTGCTCTTGTGCAAGGGTCGCCTCAGTTGGGTGGAATGAGCGCAAAAACTGAGGGTATCCACTCACGTGACTTCCACCACTGCTACTGCTTCCAGACATTTTGCTGGATTTCCTCAAACTTTGAGATGATGAAGACAGGGATTGCTGTTGTAGAGGTGGAGGAGGTGCACTCATTTTTGCAAAAATTGATGCAGAATCTGTAAAGGCACTGCCTCTAGATCCTTGTAGTGGGCCTAAGCCAAGTCCAGACAAGATTGACCCAGATGTCTCACCTTGCTGCTGTTGCTGCTGCTGTAACTGGTGTTGGTGAAGCTGCACTTGCTGTTGGTGTTGAAGCTGTCGCTCTAATCCAAGACCTTTGAACTGATGGGACTGGTGTCCACTCAGCATCTCTATGATGTCCACATTGTATTTTCCAAACTGGAACATCTCCCAGTTACTGATACATGGGTGCGCAGTGGCAACACCTTCTGCTCTGTGAGCAGCAACAAAACTTATTTGATGCTTTCCTACTAGTTGAAGTCAGAAGCAGAGGCAATTTCAAAAACAGTGCTACCCAGTGGCACCCACTTTTTCACTCTTTTGGCAAGTAGTTGAGAAGGACATTTTGTATTCATTGTAACATGAATTTGCCATTTCTTCAAAAAGCTGTTTTCAATAGAATTTGTCACTTATGAAATGACTTGAATCAACTCCCTTTTGGCTTCACATTGGATTCCATATAGGCTAATCAGTTATTTCGGATAGTTCACTTTTGATATAAATATTTCAGTCTGAATGTTCCTTAAGAGTGCAAAGACATATGGACTGGTAGAAAATGGCACAATTGCACAAGATGCAATTATGTTTTCACATTTTGGGAAGTGCACTAAAAATGCTTAATGTAGTTTGAGTTCATTAAAAAATATCCACTTGCTTGGTTACATTTTTCAGTTCATGACCATCCCACTGTAGGATGGATATATCCAAATCCCATGGGCTGGTTTTATTACATTGAATATCTATTCATTCTTAATCCACGTGAGGCCTACATCTCCGTTTCCAAGTTTCAATTAATATATTTGTCTTTTTTTTCTCCATAGTTGAAAGCAAAATCCTCCACTACCATTCTTGGGGGCTGTGAAAATGTTCTTTCTGCCACTTCTCTTCTCACTGTGAGAGGAAAAAAGGAGCAACATGTTAAATGACTGACTTTAAACAAAAACTGCAATACAATTCTTCTAACAAACAACATGAACCATCAAAACTCAAAAGACAACAAAATATCAGATTAAAAAAACAACAACAGGCAGACAGTTTATTACAGCAGACATTTTAATATTTGTTTTGTTGTTTTTTAATACACATTAAATCTTATGTGTGTGAATAATTATGAGAGTATTGGCACATCTCTGGAAAACTTTGGTCCTTCACTTGAACATCTTAAAGGCATTTCCATGTTTTCATTTTCGATCATTTGCATTCTTCAATAGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05797506_05798075.mRNA True 1933 mRNA 0.41 2 5797506 5799585

Neighbor

gene id symbol gene type direction distance location
CI01000016_05698858_05706081 NA coding upstream 90787 5698858 ~ 5706719 (+)
CI01000016_05488887_05502270 CACNG6B coding upstream 295156 5484205 ~ 5504239 (+)
CI01000016_05475350_05482964 U2AF2, U2AF2A, U2AF2B coding upstream 313560 5475350 ~ 5483946 (+)
CI01000016_05445824_05454816 EPN1 coding upstream 342090 5445824 ~ 5455416 (+)
CI01000016_05405791_05407797 AICDA coding upstream 389543 5405791 ~ 5407963 (+)
CI01000016_05828974_05833309 JOSD2, JOS2 coding downstream 28813 5828398 ~ 5833377 (+)
CI01000016_05837368_05837667 NA coding downstream 36998 5836583 ~ 5837927 (+)
CI01000016_05878037_05885761 FLCN coding downstream 78452 5878037 ~ 5886192 (+)
CI01000016_05891870_05892528 NA coding downstream 92285 5891870 ~ 5892679 (+)
CI01000016_05894658_05908090 GRWD1 coding downstream 95073 5894658 ~ 5908539 (+)
G96058 NA non-coding upstream 21196 5776060 ~ 5776310 (+)
G96048 NA non-coding upstream 41128 5756097 ~ 5756378 (+)
G96047 NA non-coding upstream 41612 5755638 ~ 5755894 (+)
G96035 NA non-coding upstream 65043 5732257 ~ 5732463 (+)
G96034 NA non-coding upstream 70431 5726845 ~ 5727075 (+)
G96076 NA non-coding downstream 123176 5922761 ~ 5922984 (+)
G96079 NA non-coding downstream 130807 5930392 ~ 5934791 (+)
G95967 NA non-coding downstream 184480 5984065 ~ 5984824 (+)
G96087 NA non-coding downstream 196913 5996498 ~ 5996720 (+)
G95792 NA other upstream 571565 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 960851 4829592 ~ 4837457 (+)
G95648 NA other upstream 1523601 4272636 ~ 4273905 (+)
G95439 NA other upstream 1933649 3862175 ~ 3862305 (+)
G96389 NA other downstream 1361056 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 1984480 7783987 ~ 7784996 (+)
G97824 NA other downstream 2214778 8014363 ~ 8015775 (+)
G98288 NA other downstream 3196513 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 3996046 9795950 ~ 9842576 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G95781 LOC108437479,LOC108266874,LOC107737915,LOC107750013,LOC107692557 non-coding NC_035906.1 CM008309.1 34909775 ~ 34917378 (+)