CI01000016_05843077_05863364 (TTYH1)


Basic Information

Item Value
gene id CI01000016_05843077_05863364
gene name TTYH1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5842120 ~ 5863364 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05843077_05863364.mRNA
ATGGCGGCCATAGCAACTGTCCCCAACTACAGCCCATCGATATGGGTACGGTTATGCCATGCCATTCCTCGCCTGGACTTGACCCTGCAGACCCGAGACAGCGTGTTCACTCCAGACAGCTGGGAGTATCAGCAGACTCTCCTGGTCCTCTCCAGCTTCTCCGCCATTGCTCTCGTCCTCTCGTTGCTTGTTGTTCTCTCCTTCCTCATTCACTACTGCTGCTGCCATCGTGGCGAGGGGGGCAGGGATGCAGAGGAAGAGGAGGAAGACGATGATGCCAGCGGTGGCCATGGATACAGCGGCAGAAAGGGGCGTGGCATCTGCTGTGTCACATGGGTATCGGTTGCAGCCGTCACATTGTGTTGTGTTGCCATAGGCATTGGTTTCTACGGCAACAGTGAGGCGAACGATGGGATGTATCAGTTGACCTCATCCTTGCTCACTGCCAATTACACGCTGGCTTCCATCGATCTTCTGGTTTCAGACACCGTGACCGGGCTGCAGCAGTCTGTCTCAGGACCCTTGACCTCTATGGAGGATGTGTTTGGAGGACATAAGCCAGCGCTCGTGCCTACACGCTCCTGCAGGCGTCTTTCAGAGCGGGTCGTGTCTCTCCTCTCCAACCTGACTCTGGGACGAGGTCTGATCCCCATCGCTGATGGATTTTACAGGGCGAATGGAAGCGAAAGCATAGTAGGAGCACTTACCCCAGCCCCACCTTCTGTAGCCCCCACTCTCAGTCCATCCGCCAACAGCATTCCTGCGCCCTTCTCCCCGGGCTGGGCAGCCAGCACCCTCATGGTGAATGAAGACTACAGGTGGCTGTCGTATGTGCTGCTGCTTTTACTGGATCTAGTGGTGTGTTTCTTTATTCTTCTGGGTTTAGCCAAACAGGCCCGCTGGCTACTTATTCTGATGACAGTGCTGGCCTGGTTGGCTCTGTTTCTGAGTTGGGGTTCTCTCGGCCTGGAGATGGCCACAGTGGTGGCCCTGAGTGATTTTTGCTTTGACCCAAACACATTTGTGCTTAACTCCACTCACTTCAACTCTAGGACAAGCACAGCTAAATTCTGTTTGTTGAACGGGCATAAGATACTGACCCAGTCCCAGAGAGCGCTTTCCAGCATCCACTCTCACCTTTCCAGTCTGGAGAGAGACGCCCTCCCACGGTTTCCAAAGGCAGAGAAGTCACTCAGGGAGGTACAGCAGATCCTCAACACCACTGAGGGCAACTTCCACCAGCTGGTAGCACTTCTCAACTGTCGAGGGCTGAACAAGGATTATGTTGACTCTCTGAAAGGCCTGTGCTATGATGGGATGGAGGGGTTGCTCTATCTTTCCCTGTACTCGTTTCTCTCCGCTTTGGCGTTCACAGCTATTCTTTGCTCCCTCCCTGGAGCCTGGAGGAGTTTCCACAGGTTAGGTGAACTTCATCGCTCCAGCCAGTCTAACATCCCATCTGCTGTTATTTTCATAAATGCCATTTCCGATTATATTCATGCCATTAATTATTTTGATGACAGTGTTAAGAGGGATGAGCTACATAAAACAAGTAGTGTTGCACTTGAGATTAATGCTTGCCGGAAACCTGAAAACTTCAGATTTTTAATGCAAAACAAATTACATGATTCCACCATCCTCAACAACAAATGCAGCTAAACGTTAATGGAGGTGGGATGCTCAACTCCAGTACAGTTTGACTTAAATGGGCCTGTGGTAACAGAATAGACACTGACAACCGCTCTCATCAGCAATGCACAGATGAGAGAAATATGATCTCAACTTAAGGGCATTAGTGCTTAAATGCACTGCACTACTTTTATCTGGATATGGTATTAATGTCACTATACCATTAGTTCAGAAAGCTCAGTCACTTACTATTGATTCAGCCTGACTTGGTACACTCCCTCAAAGTGCCGGATGTTGGCAAATCCAATTGTTTTAAGTAACAGAGGTGGCTGCAGTGCTTAATTGCAGTAAAATTGTGTTCAGAGTACAAACTCCATTTGCACAGACAGTAGATGGCAGATGCATAGATTACTGAAATGGCAAAGAGGACCAAGATCAGATTAAAGGATTACCTACTAGACTAGGATTATTTTATTTCATGACAATATCTACATGTATGAAGACATTTTTACTAAATGTCTTTGTTTAATGTATAAAGGCCTTTGTTTTTGCAAATGCACACATAACACAAAGCACATAAAGCATATACTTATTTCATGACGTTTTTTCACTTTTTTTATGTTCCATAATTCTTACTGGGTGGCATAGTGATTCAGAGGAATACGAGGACTCCGACAGCGAAAGCGAGGACCCCTTCACTTCTCATCAGGCACGTAGACAGACGTCCACGGGCTCCCAGCGAGGGGCCTTGCCCCCCTTCTATAGTTACCAGGGGGCCGGCTGGACTCCCCCCTTTTCTAGCGCGCCTCCGTTACCGTGAGTAACATATGCACAGACACACAGACAGACAGACAGAATGACCCTACCCATAAACCACCACAAGGTTGTGTACATCACCCACACATAGCTCAACAGCAGAAGCTCAATTTTTCTCCTAAATTATTTACTTAAATATCTGGAGTTCTAGGAGTGCCATTTACAAATAAA

Function

symbol description
ttyh1 Predicted to enable intracellular calcium activated chloride channel activity and volume-sensitive chloride channel activity. Predicted to act upstream of or within chloride transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Predicted to be active in plasma membrane and smooth endoplasmic reticulum membrane. Orthologous to human TTYH1 (tweety family member 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05843077_05863364.mRNA True 2616 mRNA 0.48 11 5842120 5863364

Neighbor

gene id symbol gene type direction distance location
CI01000016_05824628_05826424 UBE2S coding downstream 15696 5823123 ~ 5826424 (-)
CI01000016_05804456_05811231 SHISA7 coding downstream 30889 5803128 ~ 5811231 (-)
CI01000016_05793987_05797545 NA coding downstream 44575 5793973 ~ 5797545 (-)
CI01000016_05781693_05789936 DBPB coding downstream 51757 5781189 ~ 5790363 (-)
CI01000016_05765402_05775268 NTD5 coding downstream 66823 5764776 ~ 5775297 (-)
CI01000016_05871353_05874812 NA coding upstream 7820 5871184 ~ 5874812 (-)
CI01000016_05910340_05911197 NA coding upstream 46888 5910252 ~ 5912172 (-)
CI01000016_05930860_05934507 RCVRN2 coding upstream 67489 5930853 ~ 5934507 (-)
CI01000016_05945614_05946695 NA coding upstream 82195 5945559 ~ 5948309 (-)
CI01000016_05986400_05994821 TRIM109 coding upstream 123036 5986400 ~ 5994821 (-)
G97255 NA non-coding downstream 7209 5834570 ~ 5834911 (-)
G97252 NA non-coding downstream 64452 5777404 ~ 5777668 (-)
G97215 NA non-coding downstream 268551 5566293 ~ 5573569 (-)
G97203 NA non-coding downstream 275967 5565197 ~ 5566153 (-)
G97180 NA non-coding downstream 288134 5553295 ~ 5553986 (-)
G97185 NA non-coding upstream 18013 5881377 ~ 5887097 (-)
G97188 NA non-coding upstream 24317 5887681 ~ 5923379 (-)
G97191 NA non-coding upstream 31290 5894654 ~ 5908304 (-)
G97282 NA non-coding upstream 89594 5952958 ~ 5959473 (-)
G97193 NA non-coding upstream 96977 5960341 ~ 5964341 (-)
CI01000016_05412782_05415867 NA other downstream 423903 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 511274 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 918716 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1911069 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 2176807 3647653 ~ 3675585 (-)
G97341 NA other upstream 295622 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3025469 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3073425 8925960 ~ 8945229 (-)
G98679 NA other upstream 3371632 9234996 ~ 9239929 (-)
G98691 NA other upstream 3392738 9256102 ~ 9257611 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010528 ttyh1 coding NC_007127.7 CM002900.2 13714058 ~ 13789908 (-)
bowfin (Amia calva) AMCG00001951 NA coding PESF01000034.1 PESF01000034.1 130524 ~ 142364 (+)