CI01000016_05945614_05946695


Basic Information

Item Value
gene id CI01000016_05945614_05946695
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5945559 ~ 5948309 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05945614_05946695.mRNA
AAACACTCCATCCTCAAGAATTACAAAGCATTCCTTTGAAAAGAAAGAAACTACAAGATAAATCCAGTGCATCACTTTCAGGTATGTTTTCAAATTTTGTCCTACTCCAGCCAATATACTGCATGTCATATCACATATTGTATGTTTGTTATGTTTGAGGTGAACTAATGTTTAAAGTTTTTTCATTTTACAGTGTAGAAAAAAAATGTTTACTAAAGTACTTTTACTTCATCTTTTCTTCAGCTGGAGTCTTTACTAAAGCATCATTACTTCACAGTTTCAGAAAACTGGAATGCAGAAACATACATTTCAGTTAGTCTTAATCAGTTAGGCTATTATGAATGCCATTTCATTTTCAGACATTTAAGTTTCTTTCATTTTGTGTTTTTTTTAAATCTAATCTCTTCACAAAGTGTTGCTGTTATTAAAAGTGAATGATGATCCATCACGGTCATGTTCAAATTAGGGATGGGCATTTTTCATTTCGATCATCGATAGGGGGTGGGGTGAGGGGTGGGGCCTGGCCGTCATGGAGATGATGAAAATATCTGAAGACTGTTAGGAAAATGAATGTTAAAAATAAAAATATGACATTAAAACCTGTCTATGAAAACATGAAAAGGTGATTAGAACAGTGTTAGATTATGATGCAGCAATGTTTTTAATAAGGAAGTTAATAAGTATCACTGATATGCAGCGCATTCAGCATCTTAATAAATGTTGATATCCCGACCCAACGCATCCTATAGTAGATTAATCAGATGTAGCTATTACAACTTTCATCTGCAAAAGGTTTGAGAATGCAAACGTGAGTTTGACCGAAAGTGTAACTCCGATGTGCTTTAAAAATTGTCACTAATATTTCAGCAATATTTTGGATTCAATTTGCACTTCTGATCAACCAAAATGTTATTTTACAGTATGAAAATCACTGATGATTATTGCTAAATTAATTATGAATAGAATTGAAAGGATATTTTCAGCACAAGATAAAAGCTTGGCGCTGCACAGCTTGCATTGAACTATATTTTCATCGATCTTGTCAAAGTGAAACTAGACATCACTGCGTGACTTCGAGACCATTCTCTCTCCTCTCACGTCTTTTGACTCATGCTGTGGAAAACTAAACAATCAGAGCTCATGGCGCCGCCCAAAGTCCTGCTATAACCGATCAGGAGAAAAAAGAAAAAAACATTTAGATCGTCGTTTACATGATCGATCGTCGCTGTCACGGTAGAGTACTCGGTCGCTGTTGCACATCCCTATTTAGATTAGTTCCTGTCGTGTCTGCATGAGTTCTTGTTAGTTTCTATTGCTACACATTATCATTTGGTTCAGCTGTTCCTGTTTAGTTCCCTGTGTTAACCTGTGTGTATACAGTACTTCCTGTTTTGTTTGCTCACTGTTCTGTGTTGTCTATGTTAATAGTTTTAATATCTGTTTCCCTGAGTTTCCCTGACTATTTGTATCTTATTCTCCTGCATCATGCGCTTAATACAGCACATCCTGACAGATATGATGTTGTGAACTAAAAATTACAAATATTCCCATTGTAAATGCCATTCAATGTGTCAAAATATTTTTCTCTTTCCATAGCTTCACACTTGCAGTGTAATGGATTTGCAGGCATTGGAGACAGTTTCTGCGCTTCTAAATGAGGGAATTGTTCATATCTGTAACATCTGCAAGTCCCTCTTGGATTCACATATAGATCCCAACACCGACATGTGCCCCAATTACAAACAAATCAGGGAATATATTGAGCGTGCTGAGCAGTGCCTGAAAAAATCAGAGCAAATGTGTGAAGAAAAACTGAAATGTTTGGATGAATGCATGGAGCAACTTACTAAAGAAAAAGAAAATATTGAGCAACAGAACAAGGAAAAATGCATGGCCATGGATAAATTACACATCGAGAAGAAATCTGCTGAAGAGTCATTAAAGAATTCTAAAGCAGCTTTGGAGCAGGCTGAAAAAATTGTAGCATTAAGAAAAGATGAAATAAAAATAGAGACAGGTCCAGTAATGATGATTGCAGGAGGAAGTGTAATTGCTAATGCCTCCAAGGCTATCAGGGATACTGAAGATGAACTAAAAAAAAATGAGTCCCAAGTGAATGAGAACAGCACAAAGGTGTCTAATTACCATTCCAGTATCTCTACCATACAAAATGAGATTAAAGAGACTGATAAGGTGCTGAATAAAATTCAGAAGGAAATTGAAGAAGCAAAGCAGCATCTAGAGGTCACAGCTGATTTTCAGAAAATAGTCAGGGAAGCCGTGAGGGAAAGTCTTAGTGGAAGAGTCACTGTACTGGAGAGTCAAACTCGACGTTTCATCCTTTGGGGGCCTGTGATAAAGGTCATGGAAGATGTGATGAAGGCAGTAGTAAATGTTGCAGAGAATCGGCTCCTTTATAGGCAGGGTGTACCAGACTATGTAAATGCTTTGAGGGAGAATGTTGGAGGACTACTGGCTTTATGCAACTCAGCCCAAAAATCTGAATATGACAACTATTACTGATCATCTAAATGAATGCATAGAAACCACCTTATATGTATGCAAGTGAGGCAATAAA

Function

NR:

description
hypothetical protein cypCar_00047614

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05945614_05946695.mRNA True 2578 mRNA 0.37 2 5945559 5948309

Neighbor

gene id symbol gene type direction distance location
CI01000016_05930860_05934507 RCVRN2 coding downstream 11052 5930853 ~ 5934507 (-)
CI01000016_05910340_05911197 NA coding downstream 33387 5910252 ~ 5912172 (-)
CI01000016_05871353_05874812 NA coding downstream 70747 5871184 ~ 5874812 (-)
CI01000016_05843077_05863364 TTYH1 coding downstream 82195 5842120 ~ 5863364 (-)
CI01000016_05824628_05826424 UBE2S coding downstream 119135 5823123 ~ 5826424 (-)
CI01000016_05986400_05994821 TRIM109 coding upstream 38091 5986400 ~ 5994821 (-)
CI01000016_06018338_06023791 NA coding upstream 70021 6018330 ~ 6023791 (-)
CI01000016_06048748_06054049 RNF115 coding upstream 100431 6048740 ~ 6054049 (-)
CI01000016_06069691_06109173 ITGA10 coding upstream 120981 6069290 ~ 6109173 (-)
CI01000016_06131958_06135495 NA coding upstream 182469 6130778 ~ 6135495 (-)
G97188 NA non-coding downstream 22180 5887681 ~ 5923379 (-)
G97191 NA non-coding downstream 37255 5894654 ~ 5908304 (-)
G97185 NA non-coding downstream 58462 5881377 ~ 5887097 (-)
G97255 NA non-coding downstream 110648 5834570 ~ 5834911 (-)
G97252 NA non-coding downstream 167891 5777404 ~ 5777668 (-)
G97282 NA non-coding upstream 4649 5952958 ~ 5959473 (-)
G97193 NA non-coding upstream 12032 5960341 ~ 5964341 (-)
G97201 NA non-coding upstream 35760 5984069 ~ 5984824 (-)
G97303 NA non-coding upstream 131965 6080274 ~ 6080496 (-)
G97310 NA non-coding upstream 146571 6094880 ~ 6095235 (-)
CI01000016_05412782_05415867 NA other downstream 527342 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 614713 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 1022155 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 2014508 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 2280246 3647653 ~ 3675585 (-)
G97341 NA other upstream 210677 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 2940524 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 2988480 8925960 ~ 8945229 (-)
G98679 NA other upstream 3286687 9234996 ~ 9239929 (-)
G98691 NA other upstream 3307793 9256102 ~ 9257611 (-)

Expression


Co-expression Network