Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000016_05966893_05982233 |
| gene name | RUSC1 |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 5964215 ~ 5982645 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| rusc1 | Predicted to be active in cytoplasmic vesicle. Orthologous to human RUSC1 (RUN and SH3 domain containing 1). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU109134 | True | 272 | lncRNA | 0.40 | 1 | 5965086 | 5965357 |
| CI01000016_05966893_05982233.mRNA | False | 8565 | mRNA | 0.43 | 12 | 5964215 | 5982645 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_05960829_05963788 | FDPS, FPPS | coding | upstream | 427 | 5960829 ~ 5963788 (+) |
| CI01000016_05956820_05958904 | NA | coding | upstream | 5298 | 5956583 ~ 5958917 (+) |
| CI01000016_05942798_05943229 | NA | coding | upstream | 20765 | 5942798 ~ 5943450 (+) |
| CI01000016_05921722_05928898 | NA | coding | upstream | 34487 | 5921193 ~ 5929728 (+) |
| CI01000016_05914765_05917918 | ATG12 | coding | upstream | 46163 | 5914067 ~ 5918052 (+) |
| CI01000016_06030950_06038330 | DAP3 | coding | downstream | 48305 | 6030950 ~ 6038330 (+) |
| CI01000016_06038939_06045122 | GBA | coding | downstream | 56294 | 6038939 ~ 6045402 (+) |
| CI01000016_06058748_06068258 | POLR3C | coding | downstream | 76103 | 6058748 ~ 6068648 (+) |
| CI01000016_06158996_06159538 | NA | coding | downstream | 176077 | 6158722 ~ 6159725 (+) |
| CI01000016_06174800_06210259 | DEPDC6, DEPTOR | coding | downstream | 192155 | 6174800 ~ 6211031 (+) |
| G96079 | NA | non-coding | upstream | 29424 | 5930392 ~ 5934791 (+) |
| G96076 | NA | non-coding | upstream | 41231 | 5922761 ~ 5922984 (+) |
| G96058 | NA | non-coding | upstream | 187905 | 5776060 ~ 5776310 (+) |
| G96048 | NA | non-coding | upstream | 207837 | 5756097 ~ 5756378 (+) |
| G96047 | NA | non-coding | upstream | 208321 | 5755638 ~ 5755894 (+) |
| G95967 | NA | non-coding | downstream | 1420 | 5984065 ~ 5984824 (+) |
| G96087 | NA | non-coding | downstream | 13853 | 5996498 ~ 5996720 (+) |
| G96092 | NA | non-coding | downstream | 93733 | 6076378 ~ 6078295 (+) |
| G96095 | NA | non-coding | downstream | 98107 | 6080752 ~ 6081244 (+) |
| G96096 | NA | non-coding | downstream | 98690 | 6081335 ~ 6118470 (+) |
| CI01000016_05405791_05407797 | AICDA | other | upstream | 556352 | 5405791 ~ 5407963 (+) |
| G95792 | NA | other | upstream | 738274 | 5219880 ~ 5225941 (+) |
| CI01000016_04829592_04837305 | NA | other | upstream | 1127560 | 4829592 ~ 4837457 (+) |
| G95648 | NA | other | upstream | 1690310 | 4272636 ~ 4273905 (+) |
| G95439 | NA | other | upstream | 2100358 | 3862175 ~ 3862305 (+) |
| G96389 | NA | other | downstream | 1177996 | 7160641 ~ 7161290 (+) |
| CI01000016_07784248_07784757 | TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S | other | downstream | 1801420 | 7783987 ~ 7784996 (+) |
| G97824 | NA | other | downstream | 2031718 | 8014363 ~ 8015775 (+) |
| G98288 | NA | other | downstream | 3013453 | 8996098 ~ 9002717 (+) |
| CI01000016_09796196_09842235 | NA | other | downstream | 3812986 | 9795950 ~ 9842576 (+) |
