CI01000016_06954301_06958598


Basic Information

Item Value
gene id CI01000016_06954301_06958598
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6954301 ~ 6958603 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_06954301_06958598.mRNA
ATGCAGAATCTGGCGACTACACTGGACATTATGTTTGCAAACTTTCCAATGGAGCTGGAAAGTTGCAGCAGCTTCGACTCGTTTGAGGACGCTCAAGTTGAGCCGTTGAGTGGCGCTGTGATGCCGGCTGACAGAAAGCCCAGCAGTAGCAGCTGCCGCCCAACAGAGGCGCCTCAACCACCGTCTCTCCCTAGAGTCGTTTGGGAGGACGACACAACCGAAAAGCACACACAAGGGTGGAAATTCTTTGCTGGCCTCCGGAGAGCGTGGAAGTCTATAAAAGATCCCATCCACACCCAGGAAGAAACCCAAGTGTGTGCTTTTGTGCCTGAGGATCCATCACAGGAGCTTCCACACACATCCAGTGTGGATCCGACAGGCACAGATCCACTGGAGTCTGAGCCAACAGACGAAAAGCACACACAAGGGAGGAAATTCTTTGCTGGCCTCCGGAGAGCGTGGAAGTCTAAGAAAGATTCCTTCCAAACCCAGGAAGAAACCCAAGTGTGTGCTTTCGTGCCTGAGGATCCATCACAGGAGCTTCCACACACATCCAGTGTGGATCCGACAGGCACAGATCCGCTGGAGTCTGAGCCAACAGACAGATCCTTTGAATCTCTTTATGATGTGGGAAAGAAACTGAAGTCGAGACACGGTGTGATCATCAAATTTATTAAGAAGAACCGGCCTGAGAAACTATTGGAATTGCCTGGGTATTCCAATCCTTTAAGTCAAGAGGCAGCTGCGATGTTGATGGTGCAAAAGCCTCCAACTAGCGAGCATCTCGTACAATTATATGATCACTTTGTCATGGAAGATCGAGACATCTTGATTATGGAGTATCCACGTTCCTACATCACCCTGTTTGAGTATGTCCAACGAAACAGAGGTAACCTGACTGAAACCGCGGTGAAACACATCATTCGGGAGCTCATTGTTGCTCTTCAGCACTGCACGGGTCGTGGTGTTTATCATGTAAGTCAAGAGGCAGCTGCAATGTTGATGGTGCAAAAGCCTCCAACTAGCGAGCATCTTGTACAATTATATGATCACTTTGTCATGGAAGATCAAGACATCTTGATTATGGAGTATCCACGTTCCTACATCACCCTGTTTGAGTATGTCCAACGAAACAGAGGTAACCTGACTGAAACCGCGGTGAAACACATCATTCGGGAGCTCATTGTTGCTCTTCAGCACTGCACGGGTCGTGGTGTTTATCATGAGACGCATATGAAAAACATACTTGTCTGCACAAAAACCCTGCAAGTAAAGCTGATGGACTTTGAAGGCGCACTGCTCATCGAAGAAAGACGAGAAGACGAACCTATATTAATCAGTGCAATCAGAAAGTACGCTGAATGGGCAACAACTGACGACATATGCAAACTGCTGGATGTGATGGTCCCAAGAATAAGTCGTTGGTTTTGGATAAGACCACGGGTGTCCAAAGGTTCCCCTGCATTGGCAGCTCCTCCACGGGGCCTACAGCTCAGCTGCAGGGTCATCAAGCCAGGGACCCCGGGGACGGTTCACGCCTTTAACCCCGGGATGTGGATAAGACCATGCGTGTCCAAAGAATGCCTGGATCTTCTTGAGCGCCTTCATGACGTTACAGGCCATTTTGGATCATGACTGGA

Function

NR:

description
serine/threonine-protein kinase Pim-3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_06954301_06958598.mRNA True 1640 mRNA 0.49 9 6954301 6958603

Neighbor

gene id symbol gene type direction distance location
CI01000016_06890651_06904100 NA coding upstream 49667 6890146 ~ 6904634 (+)
CI01000016_06813604_06813789 NA coding upstream 140364 6809807 ~ 6814285 (+)
CI01000016_06756366_06782229 SETD2 coding upstream 171682 6756366 ~ 6782619 (+)
CI01000016_06684506_06687365 NA coding upstream 266896 6684506 ~ 6687405 (+)
CI01000016_06398455_06420062 MTBP coding upstream 534163 6398455 ~ 6420138 (+)
CI01000016_07178060_07180135 NA coding downstream 219457 7178060 ~ 7180810 (+)
CI01000016_07214392_07233533 RXRBB, RXRBA, RXRB coding downstream 255789 7214392 ~ 7234962 (+)
CI01000016_07445055_07456795 SLC6A19B coding downstream 486452 7445055 ~ 7457431 (+)
CI01000016_07463735_07471367 NA coding downstream 505132 7463735 ~ 7471828 (+)
CI01000016_07484583_07551063 NA coding downstream 525980 7484583 ~ 7551063 (+)
G96308 NA non-coding upstream 18300 6935688 ~ 6936001 (+)
G96305 NA non-coding upstream 19106 6930406 ~ 6935195 (+)
G96299 NA non-coding upstream 29999 6923359 ~ 6924302 (+)
G96257 NA non-coding upstream 147275 6806721 ~ 6807026 (+)
G96314 NA non-coding downstream 1834 6960437 ~ 6960751 (+)
G96317 NA non-coding downstream 4756 6963359 ~ 6963881 (+)
G96316 NA non-coding downstream 6528 6965131 ~ 6966188 (+)
G96318 NA non-coding downstream 8963 6967566 ~ 6969600 (+)
G96319 NA non-coding downstream 11526 6970129 ~ 6970369 (+)
CI01000016_05405791_05407797 AICDA other upstream 1546438 5405791 ~ 5407963 (+)
G95792 NA other upstream 1728360 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 2117646 4829592 ~ 4837457 (+)
G95648 NA other upstream 2680396 4272636 ~ 4273905 (+)
G95439 NA other upstream 3090444 3862175 ~ 3862305 (+)
G96389 NA other downstream 202038 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 825462 7783987 ~ 7784996 (+)
G97824 NA other downstream 1055760 8014363 ~ 8015775 (+)
G98288 NA other downstream 2037495 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 2837028 9795950 ~ 9842576 (+)

Expression


Co-expression Network