CI01000016_07056612_07073504


Basic Information

Item Value
gene id CI01000016_07056612_07073504
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7056382 ~ 7074008 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_07056612_07073504.mRNA
ATTTTGTGGAGCGGATGGCGTGCAGGACTCAACAGTGCAAGCATTTCACTCTCATTTGCGACTAAAAATAGATGCGTGAGAAGTACCCACCAACTGCGTCAGAAAGGTATAAAGGGAAATATATGCCTTATTAGGGTCTGTTTCTATGGGCTGCTATACTTAAGCTGTCCACCATATGACACTTGAAAGCAAGTTGACTGCATCTGCAACCTAGTTATTCACATGTATGAATATCTATATCTGCAATAGACATCAGCAGATGATTTTCACAGTATTTAGTTTATCATTAATGTGATAATTCTATAGACAGATAATGCATATACAGCCATCAGCTGCTCAATACTGTGACATTTTCAAAGAAAATGTTAGTGTGAGTGATGAACAGTGTCATCACCATTCCAAGATAGCAGACACATCAACGTGTCTGGAGCGGTTGAATGTGGAATTTACATATGCATCTCTATGGTATAATGCCATGGATGAGGCAATTGGACAACAGGCTTCCACAACACCACCGCTAGCAGTGGCATCATCACTGGAAATCAAAGCTGCAAGCTCCAGTTTCTGCCACATGTCGTGTTTGTCTGGTGGGCTCCATCAGCTCATCCACATTTCCGGCTCCAAGCCAGATATTTGCATCATTCTGCAACTACCACTTTTGGGAAAACGAATTGCTCCAGAGCACATGGGGGCGGAGCATCTTCAACGAGCCCTCATGCAGAAAGCGCCGCGGTCAACCAACGGAATCTCCTCGTCTGCGTGTGCTAAAGAAGGAAACTGTTCAAGTGTTAAGGATTTGCAGTCTATGAAGTCAGTTTCTGGGACTCTAAATGAGGGAATTGTCTCTGTCTGTAACATCTGCAAGTCCCTCATGGACGCACATGTAGATCCCACCACTGACATGTGCTCCAATTACAGACAAATCAGGGAACATATTGAGCACGCTGAACAGTGCATGAAAAAGACAGAGACAGTGATTAAAGAAAAGCTGCGATATTTGGATGAACGGATGGAGCAACTTATTAGAGAGAAGTGCAATATTGAGCATCAGAAGAAAGAAAAGCGCATGGCCATGGATAAATTACACACAGAGAAGAATTCTGCTGAGGAATTATTAAAGTATTCCAAAGCAGCTTTGGAACAGGCTGGAAAAAACCTAGAATCAGCAAAATATGCCCTAAGAAGAGCACAAGAGAGGAGGAACACAGGTGAAGGTGTTGCAATTGCAGGGGGGGTACTGCTTGCAATACCAGTTATTGGATGGATTGCAGGTTCCATAATGCTAAGTCAGGGACTGCAGGAATTAAATGAGGCTTCAAATGCCATTACAGCTGCTAAATGGGAGAAACAAAACTCTGACATTCAAGTGATGAACTGCACCACACAAGTGTCTTATTACCAGGAAACAATCTCCAGGACACAGAATGAAATTGAGCAGACCAATGAGGCACTGAAGAATATTGAGTGGGAGATAAAAGGGGTTCAAACACATCTAAAGGGCACAGGTGAAATTCAGGAAATGGTCAGGAAAGCAATGAACTTTCTGGGTGTTCTTGGTGGAAGAGTCACTGTACTGGAGAGGCAAACTCAATGTTTCATCCTCTGGGAACCTGTGGTAAAGACCATGGAAGATGTGATGAAGGCAGTAGTAAATATTGCAGAGAATCGGCTCCTCTATAGTCAAGGTGTACCAGGCCTCATAAATGCTTTGAGGGAGAATGTTGGAGGACTACGGGCTTTATGCAACTCAGCCAGTAATTCTGAAAATACCAGCTATTACTGATCACCTCCATGTAAGGCACAGAGCAAAGGCTTATAAAAGAAAAAGAAGTTTATCTGTGTTTTAGAAATCACTACAAGTAACTCTGGAAACTGTTTAACATTATCTCTACAATAATGTATGTCAGTGCCTTTGGTAGCTGTTTAGCTAAAAAAAAAAAAAACGGAGAAAGTATAACATTTGACATGTATTACGACTATACTTACAAATTATGTTGTAAACACACAAATAAA
>TU111041
CAATACTGTGACATTTTCAAAGAAAATGTTAGTGTGAGTGATGAACAGTGTCATCACCATTCCAAGATAGCAGACACATCAACGTGTCTGGAGCGGTTGAATGTGGAATTTACATATGCATCTCTATGGTATAATGCCATGGATGAGGCAATTGGACAACAGGCTTCCACAACACCACCGCTAGCAGTGGCATCATCACTGGTTCTAA
>TU111042
GCTGCTGTAGTGTAATCTGATGTAGTGGCATTTTGTGGAGCGGATGGCGTGCAGGACTCAACAGTGCAAGCATTTCACTCTCATTTGCGACTAAAAATAGATGCGTGAGAAGTACCCACCAACTGCGTCAGAAAGGTATAAAGGGAAATATATGCCTTATTAGGGTCTGTTTCTATGGGCTGCTATACTTAAGCTGTCCACCATATGACACTTGAAAGCAAGTTGACTGCATCTGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_07056612_07073504.mRNA False 2013 mRNA 0.42 5 7056382 7073979
TU111041 False 208 lncRNA 0.43 1 7073435 7073642
TU111042 True 236 lncRNA 0.44 1 7073773 7074008

Neighbor

gene id symbol gene type direction distance location
CI01000016_06998707_07047702 NA coding downstream 8680 6998534 ~ 7047702 (-)
CI01000016_06975396_06992012 NA coding downstream 64370 6975017 ~ 6992012 (-)
CI01000016_06963083_06974158 NA coding downstream 82194 6963083 ~ 6974188 (-)
CI01000016_06905366_06911635 KIFC3 coding downstream 144747 6905315 ~ 6911635 (-)
CI01000016_06814184_06871990 NBEAL2 coding downstream 184392 6814024 ~ 6871990 (-)
CI01000016_07088885_07090963 NA coding upstream 14709 7088688 ~ 7091043 (-)
CI01000016_07118966_07120089 NA coding upstream 44876 7118855 ~ 7120089 (-)
CI01000016_07127481_07148708 NA coding upstream 53486 7127465 ~ 7148895 (-)
CI01000016_07191021_07191531 NA coding upstream 117029 7191008 ~ 7191791 (-)
CI01000016_07204062_07211287 NA coding upstream 130013 7203992 ~ 7212446 (-)
G97559 NA non-coding downstream 3546 7052190 ~ 7052836 (-)
G97558 NA non-coding downstream 10073 7046089 ~ 7046309 (-)
G97557 NA non-coding downstream 10486 7045657 ~ 7045896 (-)
G97545 NA non-coding downstream 111736 6944345 ~ 6944646 (-)
G97589 NA non-coding upstream 40849 7114828 ~ 7115045 (-)
G97590 NA non-coding upstream 41613 7115592 ~ 7115826 (-)
G97594 NA non-coding upstream 48945 7122924 ~ 7123316 (-)
G97601 NA non-coding upstream 85994 7159973 ~ 7160626 (-)
G97603 NA non-coding upstream 87370 7161349 ~ 7161572 (-)
G97341 NA other downstream 896661 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 1638165 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 1725536 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 2132978 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 3125331 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 1814854 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 1862810 8925960 ~ 8945229 (-)
G98679 NA other upstream 2161017 9234996 ~ 9239929 (-)
G98691 NA other upstream 2182123 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 2435643 9509622 ~ 9512428 (-)
G97566 NA non-coding downstream 4184 7064344 ~ 7064589 (-)
G97564 NA non-coding downstream 5448 7063107 ~ 7063325 (-)
G97562 NA non-coding downstream 6856 7061579 ~ 7061917 (-)
G97561 NA non-coding downstream 8426 7060054 ~ 7060347 (-)

Expression


Co-expression Network