CI01000016_07178060_07180135


Basic Information

Item Value
gene id CI01000016_07178060_07180135
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7178060 ~ 7180810 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_07178060_07180135.mRNA
ATGAATTCTGAAATCTCAAAATCTACTCAAAGTCTTAGCTCTGCTGAGGACATGAGGAACCAAACCAAACTTATAATGCAGCCCTATGCCAACTGGGAAGAGTATCTGACTCCAGCACCTCTATCCATAGCCATCCTGGGAGAGCTGGTTTTCATCTCGTCCTCAACAGATTTCTCTATCAATAAAAATCCCCCTAAAAATGGCTATAAATTCATCAAATACCCTGATTCCTTTCGTGCTTGCCTCATGCAAGTGTGTAACTCTGGTTGGTGGGCATTTAATGAGGCCCATAAGAGCATGGATCAGATTCGCCTCCATACTGCCCAAGTTCCACAATACATGAAGGCAGCTGTGAAGATTCTGTTCCAAGGTGATGATGAAGTTGTCAAAGCACATCTTCCTGATCAGCTGGACAATATCAGAGTCATTGCAGATGAATGTCTTGAGTTGTCTAGTGCAGCTGAAAAGCGTTTCACTGATGTCATCAATATCATCCAGGAGCTGCTAGAAGCTTGTGTGAATGCAGAACACTTCTATGGGGAGGAGATGGCAGCAATCAAGAAAAAAATAGAAGAGAGCAAACTGAGGGAGCAGTCAGCTCTAGAAGCCAAGAAAAGGACTGAGAAGGCAGTGAGTGCCATGGAGAAGCAACTGGGTGAGGCTCATGAGAGCTACAAGAAAGCTCTGGATTCTCTCCCTGGTGGATGGGAAATGATTGGCATGGATTTTGTGGGCGGAATAGCTCAGAGCTGTAAAGATCTGGTTACTGGACTGACAACTGCTGTTACTCAGCCAATGAAAATGTTGAGTTCTCCAACAAGTACTATAGCTAATGCTGTGAGCCACATTAAAGGTCAGGAAAGCCAAAGAGATATGGTAGATGATATAAACATATATAGTAAGTCGGCTGAAATTTTAAATTGTGCACAGAATATCCAGCAACTAATGAATGTGAATAGTGAGGTAGATGGCATTGCCTGGACAAATCTGTATGATCAGAAGCACAAAAATACAAAAACAGATTTCATAGCAAAACAGTTTGAAAGAATTGATAAAACTTTAAAGAAAATCTCTGATTGCCCAGCAAAAATACAAGCTTTAAATTTATGCAATAAGGGCATGGAAATATGCAATCAGCTGGCAAAATATGCACCAGATGGCAAATGTGACCAAGAAAAAAGCATAATACAGGAGGTCCTGGATCTAAACAAATTAGCTCATATTTTTGACAGCAAAAGCAAAGACATCACAAATTCTCCAGCCATTTCTCCAAAACTACCAATGATGCAAAAAGAAGAAAAAAAGTCAGAGAACACAAGTCCTTCACAGAGGGCCACGGAGAATGCACGATTCGCCATAGAGCAGACCCGAGCTCAGATGAACAAGACAAGAGAGACCTATGAGAAGTGTATGGAGAACCTAGAGAAGAACCAGAAGGAACTAACTGATATCCTGGTCACTATGAGAAACTGTGAACTGAAAGAGATTGACTTCAAAACTACCATAGAGATGCTGGTCAAAGGAATGGATGCCATGGGGAGAGTAAAGGAGCAGTGGGAGAAGATGGTTCACTTCTTTCAGATGGTTTCCAACATTATAAAAACCAGCCTGAGCAAAACTCTCACAAACTTTGTCTCAACATCCGAGAAAACACAAAAGCTCTCCTACAATGCAAAGCTCTTCTCAAAAGATCTGCTGTACACTCAAGCCTTCCAAGCCTGTAACATTGCTAGTCTGGTCCATATGATCTCTGGAACATACACAGATGTTTCCAACAAGTACCTGATGGACCGTGTCAGTTCACTGGGCAAACTGATGGCCATGGATAAGAGTAAGCCAGAATTCGAGCATGAGCGACAAGCGCTCCAAAATTCATGTGATGAGGCACAAAAAGGCATCTTAAGGCTTGTCCTGAAAAATAAAGAGGAGTTTGACAGGAAGAGCACTGCAAGACTAGAAAGGATTGATCGAGAGTTGCTTGCCATTCTGCCCCCTGCTCCTCTAGAAGAAATCAAGAGTATTCAAGAGGCTGTTCAAGCTGGATTTAGTGAGGAAGAGGAGGCATCATTCTGCTGAAAGAATGTACTAAAGAATTGTTTTTTTTCTAGTTTTACATTGGTAAACACCAGATGATAATATATTTCAGATTTAAGCTTTGCTTTTCTTTAACATGTTGCAATGATAGGTCATTTTTGACAATCACGCTCTTACTCCTGTTGAGAAACATTTTAAAATGTTTATTTTTTGACGTTGTTTCTTCAGTCGGGATTGTCAGAGTGTTTTTAAATCATCATGAATTCAGATGAAACATTTAACGTGTAATATTAAAAAATCTCACCTTAATTTGATTTCAACATTGTCTGTGTGATAGCTTTATCTGTTAAAATTGTTTAGGATCTCTGGATTTAAATCTCTGTTGCTTTTTAGAAAATATGAGACGAGACAAAAGCTTTTTCTTTCAAATGTAACAACCATTCCTGTCAAGTCATCCCTCAATATCTGAAATTTTGTTCCAGATTAAGTGTGGGAAATTGGAGAACATCTTTTTGAGTACTGGTATTTAGTGGACTTTTACTTATGGTTTTTGCTTATGGAGTTCTGTTTGGATTTTAGACGTACTTCTTTTTAATTTTCCATAGTGTGTTTCTATTTAGACAAGTATGCAAATATTACTGGAGAGCACAAGGATTAACTACTTTAGTTCTGCTTTAAGTGTAATTGTTCTTATATTGTCTTCTGCCTTTGATTTTA

Function

NR:

description
Zgc:162509 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_07178060_07180135.mRNA True 2751 mRNA 0.39 1 7178060 7180810

Neighbor

gene id symbol gene type direction distance location
CI01000016_06954301_06958598 NA coding upstream 219457 6954301 ~ 6958603 (+)
CI01000016_06890651_06904100 NA coding upstream 273426 6890146 ~ 6904634 (+)
CI01000016_06813604_06813789 NA coding upstream 364123 6809807 ~ 6814285 (+)
CI01000016_06756366_06782229 SETD2 coding upstream 395441 6756366 ~ 6782619 (+)
CI01000016_06684506_06687365 NA coding upstream 490655 6684506 ~ 6687405 (+)
CI01000016_07214392_07233533 RXRBB, RXRBA, RXRB coding downstream 33582 7214392 ~ 7234962 (+)
CI01000016_07445055_07456795 SLC6A19B coding downstream 264245 7445055 ~ 7457431 (+)
CI01000016_07463735_07471367 NA coding downstream 282925 7463735 ~ 7471828 (+)
CI01000016_07484583_07551063 NA coding downstream 303773 7484583 ~ 7551063 (+)
CI01000016_07711605_07715888 SP8, SP8B coding downstream 530795 7711605 ~ 7716261 (+)
G96396 NA non-coding upstream 9060 7168683 ~ 7169000 (+)
G96392 NA non-coding upstream 13226 7164603 ~ 7164834 (+)
G96383 NA non-coding upstream 37582 7140275 ~ 7140478 (+)
G96376 NA non-coding upstream 60598 7117230 ~ 7117462 (+)
G96365 NA non-coding upstream 71853 7105979 ~ 7106207 (+)
G96397 NA non-coding downstream 1201 7182011 ~ 7182239 (+)
G96405 NA non-coding downstream 24341 7205151 ~ 7205501 (+)
G96406 NA non-coding downstream 24779 7205589 ~ 7211423 (+)
G96276 NA non-coding downstream 54357 7235167 ~ 7242286 (+)
G96389 NA other upstream 16770 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 1770197 5405791 ~ 5407963 (+)
G95792 NA other upstream 1952119 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 2341405 4829592 ~ 4837457 (+)
G95648 NA other upstream 2904155 4272636 ~ 4273905 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 603255 7783987 ~ 7784996 (+)
G97824 NA other downstream 833553 8014363 ~ 8015775 (+)
G98288 NA other downstream 1815288 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 2614821 9795950 ~ 9842576 (+)
G99041 NA other downstream 2743608 9924418 ~ 9925654 (+)

Expression


Co-expression Network