CI01000016_07214392_07233533 (RXRBB, RXRBA, RXRB)


Basic Information

Item Value
gene id CI01000016_07214392_07233533
gene name RXRBB, RXRBA, RXRB
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7214392 ~ 7234962 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_07214392_07233533.mRNA
TAGCCCTGTCAGCTCAGTAGATTCGCCACTGTCAGCCGTCAGCTCGTCCATTGGCTCTCCCGGCACCCCATCTGTCGGCTATGGGCCCATCAGCAACTCTCAAATAAACTCCTCAATGTCTGTGTCTGGGTTACATGCTGTTAGCAGCTCTGATGATGTGAAACCCCCCTTTGGCTTGAAGTCCGTCAGTGGCTCTGGGCCAGTGCTGTCCCAGAAACGCATGTGCTCCATTTGTGGGGACCGCTCCTCGGGGAAGCATTATGGCGTGTACAGCTGCGAAGGCTGTAAGGGTTTCTTCAAGCGCACAGTCAGGAAGGACCTGAGCTACACCTGCAGGGATAACAAGGAGTGTCTGGTCGATAAACGTCAGCGCAATCGCTGCCAGTACTGCCGCTATCAGAAGTGCCTGGCCATGGGAATGAAAAGAGAGGCTGTTCAGGAAGAGCGTCAGAAGAATAAGGAGCGAGATGGAGACTATGAATTCAGCAGTGCAGCCAATGAGGAGATGCCTGTGGAGAAGATCCTGGAGGCCGAGACAGCTGTAGAGCATAGAACAGACCTGCACACTGATGCCACTGGTTCATCCAATGATCCAGTCACTAACATCTGCCAGGCTGCAGACAAACAGCTGTTCACTCTGGTGGAGTGGGCCAAGAGAATCCCTCACTTCTCTGAGCTGCCCCTGGATGACCAAGTCATTCTGCTCAGGGCTGGATGGAATGAGCTCTTGATCGCTGCCTTCTCTCATCGCTCCATCAGCGTGAAGGATGAGATTCTGTTGGCCACGGGTTTACATGTGCCCAGAGACAGCACTCACAACTTGGGAGTGGAGGCCTTTTTTGACAGGGAGAGTGCGCACAGTGCAGAGGTAGGAGCCTTATTCGACAGGGTGCTGACTGAGTTGGTCTGTAAGATGCGTGATATGCAAATGGACAAAACTGAACTTGGCTGTCTGCGTGCCATAGTTCTGTTTAACCCAGATGCCAAAGGTCTGACTAGCAGCAGTGAGGTGGAGCTTCTCAGAGAGAAAGTGTACGCATCCCTGGAGGCCTATTGCAAGCAGAAGTATCCAGATCAGCAGGGGAGGTTTGCCAAGCTCCTTCTCCGGCTTCCTGCGTTGCGTTCCATTGGCCTTAAGTGTCTGGAGCACCTTTTCTTCTTTAAACTGATTGGAGACACCCCCATTGACACTTTCCTAATGGAGATGCTGGAGTCGCCCCACTAGCTGCATCAGAGGAAGATTGGGAGACAGGGTTTTTCTACCCTAGGTCCTGGAGATAACTGTGACTGCACTTTTTCTTCCCAGGGAAATTACAGCGATTGGTCAGCCTCTGGTCTGGGGGTATTTTTATTTTTCATTTGTCTTTTATTTTTATTTTTTTCTCTTGACTATTTCTTAAGTGCACCATAGAGTCTAGAGACCCAAAACTTGCCATGAAAAATTATTGGTGCTACATTTCAACAAGTAAGCTAATTCTAATATATATATATATATATATATATATATATATATATTCAAAACAAAATGTTTTTAAGTATGGAAGCTTCAGTTACCTGACTGGTTTAGATAAGTGGGGTTTACATTTTGATAGAACCATTTGAGGCTTTTAAAACACTGTGGATGATAAGCTTTAATCATATGTAAGTGTGCTTCACCATCTCTTAAGTTTGGGTGCTTTCTTCCTGTACGGCTAATTTATTTTGCCCCGACCTGTAAGGACTGGTCAAACGGGCGAATAGATGAATGAATTCATTCGGTATTATAGATTTAAATTGACATTCACTTTGCTAGCTTGAGAAATCTGGCAAAGAAATCTATATGCAATGAAGCTTGAACTGATGCAAAACAGAAAAGACTAGATGTTTAATCTCCAAAAAACAGACAAAAAAAACAAAAAAAAACGCAATTTACGTGATATTGTGCAATGTTAAGCCTAAATCCAGAAGTGGAAGTGAGGGAAATGCAAGCACTCTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTCCTCACGCACTCATTTTATTATCACGTCATGAGTGCCTAACTGACATATGCTTGATTTATGTTTTTTATTTAACGTTTGACAGCAGAAAGGACAAACAAAAAGATGAATCTCTGTTCACGTCATCAGCAGTTATTGTACGAAGCAGGTCGATTTTCTTTTTCTCTTTTTGTTTTGCCTGAAGTGTCCTAGGCTGAAATTGTCTTAAACCTGCATTGGTTTTACTAGTTAACTGTCAGTTAATAATACACTCTCTTCTCTTATCACATATCAGGTAACTGTATAAGAGTGATAATTCCTTAAGTAAACTGCACTACACAAAAAAAAAAAAAATGTCATTCCTTTTTCTTTTTTTTTTTTTTCCGACCAGTGTCAGATTTTTAAAGAAAATATTACTTTGGTGCTTCGGAATTGACATTTGGGTAAAACTTTATAATAACTTTCATTA
>TU109486
AATACCTTTCTGGGCATTTGAAAGTGTTAATTATCTTGCTGTCAATGCAGGCCTCGCTTAGCCATAATGATTTTATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGGAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATAAATGACAGAATTTTTGGGTGAACTAACCCTTTAACAATTAATGTTTTTATAATAATAAAATTATATTAAGGTACTTTTTAAAAGTCTTTTTTTTTAACATTTGAAGAGTTCATTTGCAAAAACTCTTTTTATTAATTCTCTGATTTTATTGTCCAAGTAATATCAGTCAAACTGCAGTTGGGTTGCTTTGATTAAGTAATAATAACTCCAAAAAATACAGGTAACTTACAAAATTAAAGTTCATTGAAAGTATGTTTTTATATATATATATATATATATATATTATTAAAAGTTAGTTTTAGCAAAAGCAGATAACTCCGCATTTCATGTTTCAGAGTTAAACCAAACCAAGTAATTGCTTTGTAATTGCATTTAAAACACACTCAAACACACATGTGCACACAAGCGCGCACACACACTAACAGATCGGCACACATGCGCGCGCATGCACGCACACACAAACGCAAAAGGACAAACAAGGGTTCGGCATGTAAGACGTGTATGGTGTGCAAGGACTTGCAGGATTTGAAATTATAAATCCTTGATCACTTTTAGTCAGCTTTGATGAAACTCCCCTCAGCTAGCGCATATTTTTAAAGTGTCACCTGTCACCTGACCTGAATATTGTGTGCTGATTCACTAAAACAGACTTATCGGTTTCTGTACACAAACAACAAGGGCGCTTGTCAGTTTCTGCTGTAAAATGTGAACTTGTGATGCCTTGACAGTGGACAATACCGGCTTTTCTGACAAAACGTATTTAGGGTTCAGAACGTGCTATATGTGGAGAATAATGCACAGTGGCATTTATCGGTTTTTGCAAATGAACTCTTCATTTATCCAGTATAGCCAGAACGTTTCATTCTTCATTCACATTTTCATTTCAATGCATCACTACATGTCCCATCAGTCTCTGTGTGTGCTTATTTTTCAGGCCAACACTATAAACATATTTGAATTCAGTTGTGTTTAATGATTCAGTGTTAAACCTTTTATCCTTTCTTTTGCTCTTGCCCCCAATGTTGCATTGAGCATGCTTAATAAGCCGACAATGGTCATAACCTGTGTTCTGTCAGCTTATTCAAGTGTGCACATCTTACTATGTGACAGGAAAGCATCTTTACTGCAGATTTAAACGCATCCAGTCAGAGTGAGTGTTTCATGGTGGGTGGAATTATATTATACATCCCGACTCTTTCCTAACCCAAAAAATAATAAAAATGTCTTCTCATCTCATGCATTCATAACATTCCAAAGAATTATATCGTACTTTTTACTCCACTACATTCTACAAAAACATATCGTTCCTAGTTATTTCAAATTCAAGAAATCACCGGCCACCCCCTCTGAGATGTGATAACAATGTCCGATCCATGAACGAGTTGATTCATTCCAATGAATTCCTAGTGAGTCAACAACTCACTGATTTAATGATCTGGTTAAAATAAGCCAAGAACCGGGATATCATCAGAGCTTGAACATGTGCGCTACTGATGCTGCAAAAAGCAAGTTACTAATGCCGAATTTCAGTATTGATTATTGTAAATGTAATCATATTTATGTCATGACTGTCAGTTATTTGTGAAGTAAATTTGCTGTAAAAGGGCGAGTTGTTTAAGGCCATTGAAATGCTTGTCTAGATTTGTTTCACTGTCTGTGTGGCAATTTTAAGTAAAATGACGCAAATTAATGTCCATGCATCTTATCTGCTGCTGTAGCAGTTTCAAAAGATATAAAACTTGTAAGATGGCATTTAAGATGTTCATCTTAAAATGTTAACATATTTTGCCCCATGTGATGTCTGTACATTGTATTGTATTTGTAGCCACATATTTAGCTACACATATTTAGTTTTTCTCATTTTTAAAATACTATAATGGTATATTATTTCACATGTTTGGACACTTGAATTACCAGTAACTTAAATTGATATTTTAGTATATTGAAGTTAAATAATAATAAGCATGGTTTACCGATCAGAACTTTTTACTTTTAATACTTAAGTACATTAAAAATCAAGTACTTTTGTACTTTTACTCAAGTAAATGGAAAATGAGTACTTAATCAAATATATTGGAGTAATATTTTATTTATACTTTTAGTCAAGTACTTGATTTGTGTACTTGACTCCACCACTGTATTTTGACGTCACTACTGGGGAATAACCAGATTTTTTGTAAAGTCTTGCAAACAAGGTCTTGCAAGCAATTCATTTGCAAAGTTATGCCAAGCATTGATTGTTTGTCAGCTGTTGCTTGGCAAAGTCAGTTTCCTGCTGGGTGAAAAAAACCCTTATTTAAAGCTGTTTAAATGCTGGTATTTCCAGAGCTGGTTTAGAGGTTAATATCTTACTCCTAAAATGTTCTGTGTTTGGAGTTGAATATCCCCACAGACAAATTGACAAGAATGAAGCTTTCAGACGTTTATCAGTTCACAAATTCTCTTTATGTTGTCCAGAAGTGCCAGAGGCATTTGCTCTAACTCTCTACCACTGACTCTGTGACTTCTCTGTTCTCCAGTCCAATGATCCAGTCACTAACATCTGCCAGGCTGCAGACAAACAGCTGTTCACTCTGGTGGAGTGGGCCAAGAGAATCCCTCACTTCTCTGAGCTGCCCCTGGATGACCAAGTCATTCTGCTCAGGGCTGGTACGAGCGTCAGACATTCTCACACTCATTTTGAGTTACAGCTAATATCTGAAATATTCATATATATATATATATATGTAAGTACTCAGCATTCTGAAGAGAAATAGAGGACGTTTACACAGGACAGATAGATGGAGTACAGCTAAAGGGAATAGAGCCAAGGATTTAATAGTTACGTATATTTGACACAGTGTCTTAAAAAGCAACACTCATGGCACAAGACACTAAAAATAACAAAATGCAATGCACTGACCAAAAAAAGAGAGTGCATGAAAAAAGAGAGTGCTTGGATGAATTATATTAAGGATGTAAAAATGTATAAATGTACATGAAAAGTGTTTTAAGGGGTTAGTCCACCCAAAAATGAAATTTCTGTCATTAAGTACTCACCCTCCTGTCGTTCCAAACCCGTAAGATTTTCGTTTGTTTTCGGAACACAAATTAAGATATTTTTGATGAAATCCCACGGTTAGACATAAACACTAAAGCTCTGCAATGAAAATAGCTTAGCAGTAAGACAGGGGACAGACTAATTTGTTCAATAAAGTAGTTATTTTTGTTTTTTTTGCACACAAAAAGTATTCCCGTCACTTCATAATATTAAGGTTGAACCACTGCAGTCACGTCGCCGGTTTTAACGATATCTTTAGTACCTTTCTGAACCCAAAAGGTGCAATGTCGTGGATGCCTATGTGTGGATCAGAAACCTTCGGATTTCAGCAAAAATATCTTAATTTGTGTTCCGAAGACAAACGAAGTTTGGGACGACATTAGGGTGAGTACTTAATGACAGAAATGTCATTTTTGGGTGAACTAACCCTTTGATATATGTGATATTTTTATAACAGGATGGAATGAGCTCTTGATCGCTGCCTTCTCTCATCGCTCCATCAGCGTGAAGGATGAGATTCTGTTGGCCACGGGTTTACATGTGCCCAGAGACAGCACTCACAACTTGGGAGTGGAGGCCTTTTTTGACAGGTCACACTGAACATTGTGTTTACATCTGTTTAATAATGTAATAGTTTTAGAGGCTTAACATGTTCATAATGTCTGTACAGGGAGAGTGCGCACAGTGCAGAGGTAGGAGCCTTATTCGACAGGGTGCTGACTGAGTTGGTCTGTAAGATGCGTGATATGCAAATGGACAAAACTGAACTTGGCTGTCTGCGTGCCATAGTTCTGTTTAACCCAGATGCCAAAGGTCTGACTAGCAGCAGTGAGGTGGAGCTTCTCAGAGAGAAAGTGTACGCATCCCTGGAGGCCTATTGCAAGCAGAAGTATCCAGATCAGCAGGGGAGGTTTGCCAAGCTCCTTCTCCGGCTTCCTGCGTTGCGTTCCATTGGCCTTAAGTGTCTGGAGCACCTTTTCTTCTTTAAACTGATTGGAGACACCCCCATTGACACTTTCCTAATGGAGATGCTGGAGTCGCCCCACTAGCTGCATCAGAGGAAGATTGGGAGACAGGGTTTTTCTACCCTAGGTCCTGGAGATAACTGTGACTGCACTTTTTCTTCCCAGGGAAATTACAGCGATTGGTCAGCCTCTGGTCTGGGGGTATTTTTATTTTTCATTTGTCTTTTATTTTTATTTTTTTCTCTTGACTATTTCTTAAGTGCACCATAGAGTCTAGAGACCCAAAACTTGCCATGAAAAATTATTGGTGCTACATTTCAACAAGTAAGCTAATTCTAATATATATATATATATATATATATATATATATATATTCAAAACAAAATGTTTTTAAGTATGGAAGCTTCAGTTACCTGACTGGTTTAGATAAGTGGGGTTTACATTTTGATAGAACCATTTGAGGCTTTTAAAACACTGTGGATGATAAGCTTTAATCATATGTAAGTGTGCTTCACCATCTCTTAAGTTTGGGTGCTTTCTTCCTGTACGGCTAATTTATTTTGCCCCGACCTGTAAGGACTGGTCAAACGGGCGAATAGATGAATGAATTCATTCGGTATTATAGATTTAAATTGACATTCACTTTGCTAGCTTGAGAAATCTGGCAAAGAAATCTATATGCAATGAAGCTTGAACTGATGCAAAACAGAAAAGACTAGATGTTTAATCTCCAAAAAACAGACAAAAAAAACAAAAAAAAACGCAATTTACGTGATATTGTGCAATGTTAAGCCTAAATCCAGAAGTGGAAGTGAGGGAAATGCAAGCACTCTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTCCTCACGCACTCATTTTATTATCACGTCATGAGTGCCTAACTGACATATGCTTGATTTATGTTTTTTATTTAACGTTTGACAGCAGAAAGGACAAACAAAAAGATGAATCTCTGTTCACGTCATCAGCAGTTATTGTACGAAGCAGGTCGATTTTCTTTTTCTCTTTTTGTTTTGCCTGAAGTGTCCTAGGCTGAAATTGTCTTAAACCTGCATTGGTTTTACTAGTTAACTGTCAGTTAATAATACACTCTCTTCTCTTATCACATATCAGGTAACTGTATAAGAGTGATAATTCCTTAAGTAAACTGCACTACACAAAAAAAAAAAAAATGTCATTCCTTTTTCTTTTTTTTTTTTTTCCGACCAGTGTCAGATTTTTAAAGAAAATATTACTTTGGTGCTTCGGAATTGACATTTGGGTAAAACTTTATAATAACTTTCATTAATAAATCATAACAAACATTATATCATATTTAACAGATCATTAGTTAATATATATTCATATACCTAGAAATATGAGATAATGTACGTTAATGTTTACTATTGAACTTATTAAACATTACATAATAATTAACCGACCATTATTTAATGCAAATTGATATGCTTACAAATGTCATTAAACTTTCAATTCATATGATCATGCAC

Function

symbol description
rxrbb Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in blastoderm; ovary; and testis. Orthologous to human RXRB (retinoid X receptor beta).
rxrba Contributes to DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in regulation of transcription, DNA-templated. Acts upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including blastoderm; digestive system; eye; gonad; and tail bud. Orthologous to human RXRB (retinoid X receptor beta).
rxrb Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and nuclear receptor activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleoplasm.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K08525 RXRB, NR2B2; retinoid X receptor beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_07214392_07233533.mRNA False 2454 mRNA 0.43 10 7214392 7234762
TU109486 True 5669 lncRNA 0.36 4 7226623 7234962

Neighbor

gene id symbol gene type direction distance location
CI01000016_07178060_07180135 NA coding upstream 33582 7178060 ~ 7180810 (+)
CI01000016_06954301_06958598 NA coding upstream 255789 6954301 ~ 6958603 (+)
CI01000016_06890651_06904100 NA coding upstream 309758 6890146 ~ 6904634 (+)
CI01000016_06813604_06813789 NA coding upstream 400455 6809807 ~ 6814285 (+)
CI01000016_06756366_06782229 SETD2 coding upstream 431773 6756366 ~ 6782619 (+)
CI01000016_07445055_07456795 SLC6A19B coding downstream 210293 7445055 ~ 7457431 (+)
CI01000016_07463735_07471367 NA coding downstream 228973 7463735 ~ 7471828 (+)
CI01000016_07484583_07551063 NA coding downstream 249821 7484583 ~ 7551063 (+)
CI01000016_07711605_07715888 SP8, SP8B coding downstream 476843 7711605 ~ 7716261 (+)
CI01000016_07743396_07746536 MACC1 coding downstream 508326 7743088 ~ 7747383 (+)
G96406 NA non-coding upstream 2969 7205589 ~ 7211423 (+)
G96405 NA non-coding upstream 8891 7205151 ~ 7205501 (+)
G96397 NA non-coding upstream 32153 7182011 ~ 7182239 (+)
G96396 NA non-coding upstream 45392 7168683 ~ 7169000 (+)
G96392 NA non-coding upstream 49558 7164603 ~ 7164834 (+)
G96276 NA non-coding downstream 405 7235167 ~ 7242286 (+)
G96414 NA non-coding downstream 28956 7263718 ~ 7264594 (+)
G96415 NA non-coding downstream 50309 7285071 ~ 7286600 (+)
G96283 NA non-coding downstream 75282 7310044 ~ 7311878 (+)
G96453 NA non-coding downstream 95004 7329766 ~ 7331011 (+)
G96389 NA other upstream 53102 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 1806529 5405791 ~ 5407963 (+)
G95792 NA other upstream 1988451 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 2377737 4829592 ~ 4837457 (+)
G95648 NA other upstream 2940487 4272636 ~ 4273905 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 549303 7783987 ~ 7784996 (+)
G97824 NA other downstream 779601 8014363 ~ 8015775 (+)
G98288 NA other downstream 1761336 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 2560869 9795950 ~ 9842576 (+)
G99041 NA other downstream 2689656 9924418 ~ 9925654 (+)

Expression


Co-expression Network