CI01000016_07711605_07715888 (SP8, SP8B)


Basic Information

Item Value
gene id CI01000016_07711605_07715888
gene name SP8, SP8B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7711605 ~ 7716261 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_07711605_07715888.mRNA
ATCACACAGCTCTCGCGCATCTCTCGCGCTGTCTTGTCAGAGGACATGAACACATGTTTTGATTACACCACCGGTGGCCGAGCGGCTCCTCCGTTATTCGTAATTAAACTCAATTCCCAAATAGCTAGATATTTCTTTACTAGCACTCTTCAGGAGGAGCCGAGATTGGGGTCGACTCCTTTAGCCATGTTGGCTGCGACGTGTAACAAAATCGGGAGCCCGAGTCCTTCTCCTTCCTCTATTTCGGATAACTCCTCTTCGTTCGGAAAAGGATTCCACCCGTGGAAACGAGCGGCAGCCAGCAGCTGTAATTTAGGATCCAGTTTATCCTCTTTCACTCGGAATGGTGGTGGTTTAAGCGACTCTTTTGGCACGAACACTTCCACGGGATCCAGTGCCTTTTCCTTAACTTCTGGTACTTCATCCAACTCCCACTTCGGAAACGACTACTCCGTTTTCCAGGCGTCTGTTTCCAACAACTCCCAAGAGCCCAGCCACCAGCCCATGTTTATTTCCAAGGTGCACACGTCCGTGGACAGTTTGCAAAGCATTTACCCGAGAATGAGCGTGGCGCATCCATACGAGTCGTGGTTCAAGTCCTCGCACCCTGGCATACCCACGGGGGATGTGGGCACCACGGGCGCATCCGCGTGGTGGGACGTGGGAGCCGGCTGGATTGACGTGCAGAACCCGAACGGGGCCGCACTCCAGACGTCCCTTCACTCCGGTGGGCTGCAGACTTCTTTACACTCACCTCTGGGCGGATACAACTCAGACTACTCGAGTTTAAGCCACTCTGCCTTTAGTACCAGTGCGTCCCCGCATCTCCTGACCACCGGTCAGCACCTCATGGACGGATTCAAACCCGTGCTCTCCTCGTACCCGGACTCCAGTCCCTCTCCCCTGGGTGGAGCGGGAGGCTCAATGTTGACAGGGGGTCCGACGGCCTCGCTGGCGGGATCTCCGCGGTCCTCAGCGCGGCGCTACTCGGGCAGAGCGACGTGCGACTGCCCGAACTGTCAAGAGGCGGAACGGCTGGGTCCAGCAGGCGCGAGCCTCCGCAGAAAAGGGCTACACAGCTGTCACATTCCCGATTCTATGCGACATGAATTTGGTAAATTAAGGGAATATTAAAAAGGACATAATCTGATATGTGCATTCTGATGGGTATTTGTCGAATAGTCTTTTACTTACTGTTGTTATTAAACAGAAAACAAAAATGTATTTTAGCCATCAGTGAAGTGGCCTGTCATTGCTAACTTTTTTTCTCAAAACCAAACTGTGGCACTTTATTCATGAACACTACTAAAATCCAATTTCGTAAGGATAAATTGCCGTAGTGTTGAATAGACTTCGTTTTGTCATTTACAAATTCACTTCTTTAATATTCGAAAAATAGTCTATATATCGCACATTGGTCTTTGTCGAAACTACAGACTACAAATCCTAAGTTGTATGAAATGTACTTATTTCCTGTTGCTGCAAAAAAAACATGTACATATTGAAA

Function

symbol description
sp8b Enables double-stranded DNA binding activity. Involved in embryonic limb morphogenesis. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including apical ectodermal ridge pelvic fin bud; midbrain neural keel; nervous system; neural plate; and neural tube. Orthologous to human SP8 (Sp8 transcription factor).
sp8 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within dorsal/ventral pattern formation; embryonic limb morphogenesis; and proximal/distal pattern formation. Predicted to be located in nucleus. Predicted to be part of chromatin.

GO:

id name namespace
GO:0030326 embryonic limb morphogenesis biological_process

KEGG:

id description
K09198 SP8; transcription factor Sp8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_07711605_07715888.mRNA True 1507 mRNA 0.50 4 7711605 7716261

Neighbor

gene id symbol gene type direction distance location
CI01000016_07484583_07551063 NA coding upstream 160542 7484583 ~ 7551063 (+)
CI01000016_07463735_07471367 NA coding upstream 239777 7463735 ~ 7471828 (+)
CI01000016_07445055_07456795 SLC6A19B coding upstream 254174 7445055 ~ 7457431 (+)
CI01000016_07214392_07233533 RXRBB, RXRBA, RXRB coding upstream 476843 7214392 ~ 7234962 (+)
CI01000016_07178060_07180135 NA coding upstream 530795 7178060 ~ 7180810 (+)
CI01000016_07743396_07746536 MACC1 coding downstream 26827 7743088 ~ 7747383 (+)
CI01000016_07759095_07759370 NA coding downstream 42834 7759095 ~ 7761274 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S coding downstream 67726 7783987 ~ 7784996 (+)
CI01000016_07851297_07854401 NA coding downstream 134495 7850756 ~ 7854610 (+)
CI01000016_07937188_07955977 ANKRD44, ANKRD28B, ANKRD28 coding downstream 220927 7937188 ~ 7956457 (+)
G97724 NA non-coding upstream 59252 7652042 ~ 7652353 (+)
G96518 NA non-coding upstream 157065 7554210 ~ 7554540 (+)
G96453 NA non-coding upstream 380594 7329766 ~ 7331011 (+)
G96283 NA non-coding upstream 399727 7310044 ~ 7311878 (+)
G96415 NA non-coding upstream 425005 7285071 ~ 7286600 (+)
G97760 NA non-coding downstream 55377 7771638 ~ 7771965 (+)
G97764 NA non-coding downstream 61810 7778071 ~ 7778392 (+)
G97745 NA non-coding downstream 109127 7825388 ~ 7827695 (+)
G97746 NA non-coding downstream 129655 7845916 ~ 7847529 (+)
G97747 NA non-coding downstream 131396 7847657 ~ 7859181 (+)
G96389 NA other upstream 550315 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 2303742 5405791 ~ 5407963 (+)
G95792 NA other upstream 2485664 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 2874950 4829592 ~ 4837457 (+)
G95648 NA other upstream 3437700 4272636 ~ 4273905 (+)
G97824 NA other downstream 298102 8014363 ~ 8015775 (+)
G98288 NA other downstream 1279837 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 2079370 9795950 ~ 9842576 (+)
G99041 NA other downstream 2208157 9924418 ~ 9925654 (+)

Expression


Co-expression Network