CI01000016_07969424_07983149 (HACL1)


Basic Information

Item Value
gene id CI01000016_07969424_07983149
gene name HACL1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7968328 ~ 7983566 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_07969424_07983149.mRNA
CTATAAAAATACTATTCATCTCTTGTCAGTGTTATTTCAGGGTTTTGATATCTGAGAGAGCACTATAATGGCTATATTTAACACTATATTTATTTAACATTACCTCTAAAATTGAATTCGGCTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAATGTTTGATAGTTCAAACGTTCAATTCCCATTACAGTAAAGTCCATCTCTGAACTAATAGCACCGCTTTGAGGAACTAATAACATGTAATATCTTTTCATATCTGTCATATTTCAAATTAATCTAAAACAAAAGTTTTGACTGCTGCATATTTACACTTAAATCGATAGGCTACTGATTTGCGCTTTACTTCAATGTATTGTACATTCGCTCCGGCTGCCCAGTGCGTCTAGCAGCTTTCCCACACATATTTTTATAGTTGGTCAGTTAAATAAAACAGGCAGTGTGCCAACGTTGTAGGCTATGGGGTAGTTTATGTGCAGCTGCAAAGTAAACTAATATTTATGAGAAAGAGATGAAATGTAGTTGGAATAAATGTGTTAAGTATCCGTACAGCTGTAGAGCGAGGGACTTTTATTCTGTTGAGCGGAACAACTGATGACGACATGGTTTGATGTCTGGTTGACCAATCAGCGGAAAGAGGCGTTTCATTCCCGCCCACATGTAGAGATCGAATATTCAAGCTGATTATTCGTTTCCAATCCCAGAACGAAAAAACGAAAAATCAAGCCAATTTTTTGTTTTTTCGTTTTCTTTTTAAAAATGAAAAACAAAAAAGTGCCGTTTTCTCATTTTTCTGATTTCGATATTAAATCAAAAAACGAATGAACGGAAGATACCCTGTATGTTGTAACACTTCTCTTCATTGTACTTCTACTGGATTCAAAAAAAGGGACAGTAGACTAGCATTTGCCACAAATGTCTTTAAATGTGAGAGTGACACACACTACAGCACGTCCAGTATATCCAGTAGGTGGAGACATGCGCTTTCATTTCATTTTAACTACACACACACACACACCACAGAAGAAGAGCAGCAGGGCAGAAGAGAAGTTTGATATCTGTATATGAGTGAAATGAGTCTGTTGTGAAGGTGATTATGGATGAAGTGACTGGAGCTCAGCTGATCGCTGCGGCGCTCAAATCTCAGAATGTGGAGTACATGTTTGGCATCGTTGGCGTGCCTATCATCGAGGTGGCCATGGCCGCCCAAGCAGCTGGCATCAAGTACGTGGGCATGCGCAATGAACAAGCAGCCTGCTATGCTGCATCTGCTATTGGGTATTTGACAGGATGGCCAGCTGTGTGTCTGGTGGTGTCTGGACCTGGACTGATTCATGCTCTCGGAGGAATGGCCAATGCTAACGTGAACTGCTGGCCAGTCATTGTCATTGGCGGCTCATCTGATAGGAACCAAGAAACCACAGGAGCATTTCAGGAGTTCCCTCAGGTTGAAGCTTGTCGTCTGTATAGCAAGTTTTCTGCTCGACCAAGCAGCCTTGAGATGATACCAGCTGTAGTTGAAAAAGCTGACAGCAGGGAGATCACACAGACTGTCAGGCTGCTCAAAGCAGCTCAGAGGCCTCTGATCATCGTGGGCAAAGGTGCGGCGTATGCCAGGGCGGAGAAGGAGGTCCGGGAGCTTGTGGAGGTGACTGGAATCCCCTTCCTTCCCACACCTATGGGGAAAGGACTACTGCCGGATGACCACTCCAACTGTGTTGCTGCAGCCAGATCCAGAGCTCTATTGCAGGCTGATGTTATAGTGCTGCTGGGTGCCAGACTCAACTGGATCCTGCACTTTGGTTTTCCACCAAGATTCAGTCCCCATGTGAAAATCATTCAGGTGGATCTATGTGCTGAGGAGTTGAGTAATAATGTGAGAGCCGCATCTGCTCTGCTCGGAGACATACGGGCTGTGGTCAGCCAGCTGTTGGAGACCGTAAGATTAGAGTCCTGGAGATTTCCTTCTGATTCACAATGGTGGGTGACACTGAGGGACAAAATGACTGCCAATGCTCAGATATCAAAGAATCTTGCCCTCCAGTCCACTCTGCCCATGAACTACTACACAGCGTTCCACCATATTTCTGAGCTCTTGCCCAAAGACTGCATCATAGTGAGTGAGGGAGCGAACACTATGGACATCGGCCGTACCATGCTTCTCAATTACCTCCCACGACACAGGAAATTTAGAGAATGTACCATAGACTACGTAGCTCTATTAAATGTTGAGTTCTACTGTAATGTTGTCCAGAGCAGTAATCTGAATGTCCTGTACAGGTTAGATGCAGGCACATTTGGCACTATGGGGGTGGGTCCAGGCTTTGCCGTTGCCGCAGCAGTTTTGGAGCAGACCCAGAAGAGCGCTCAGAGAGTGGTGTGTATAGAGGGAGACAGCGCTTTCGGTTTCTCTGGCATGGAGGTGGAGACCATGTGCAGGTATAAACTGCCCATCATCATCATAGTAATCAACAACAATGGCATCTACAGTGGAGTGGATCCAGAAACATGGAAAGAGATGGAACAGATGGGAGACATGACCACCATTGCTCCTCCAGTGACCCTGCTGCCAGAGGCACGGTACGAGCAGGTGATGAGTGCGTTTGGGGGTCGTGGGTATCTGGTTCGAGCGGTAGAGGAACTCCGCAGTGCACTACAGGAGAGTCTGACAAACACAGAGATGCCCAGCCTCATCAACGTACTTATAGACCCGGCCTCAGACCGCAAACAACAGGTCAGTGTTGTGCGCACTGCTCCAGAGGGCTTCTGTTTAAGCTCATGTCAGTCTCTGGATAATTGAGGTCTTCCTGGCCTCATCCTCTGCTCTTTCATAAGGTATCATTACAGTGGTGCTTTATCACAGAGTGAGAGAGCTTCTCCGCCTTGACCTTGGCAGATCACACCATTTTCACATTTCCAGGTGTGGAAATGTTCCCAACAGTTTTACAGCAT
>TU111314
CTTGAGGGTGAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTATCCCTTTAAATGCTGTCATCACACTGAGCAGGAAAAATCTTCTACTATTCTATGAATAGTCCTTTTTTACAGCCTTGTTGTGTTTATACTTGTGCTCTTGCAAACTATATTCTTACTCCAGCTTGTAGATTTTAAATAAAAATTGAAAGAGTTGTTGGAAGCTTGGTGATGGTGGTGTTGAAGTCATGTGGCCATGGTGTAGTTCATTTAAAGCCTAAATTTAACTTTTATTGCTGGTGATTGTATTTTTGATGAACGAAACATGTAAGAATCATAAACTTTTGTTGTTCACAAAGCATATTTTATGCAATAATCCAAAAGCCAATGGAAAAATCCTTGTTGAGGGAACCAGGGTGATGCTAACTTCCTGGTTAACCTACAAAAAATGTCATCTCTTCAGTACTTTATAGTGACCATCTCAGTCAAACTAAAAAAAAAGTGATTCATATGTTTTGTGTAAGTCTTCTACAGCTTTATGTGAGGAATAAGCTAAAATGTAAATCATTATTCGCTGATAATATTCACGTCTTGCATCTAGCCCGCATTGTTTTGTTCCTTTTAATAGCTTTGCAGCCGTGTTCACTATGAACTGTCATTCTGTGGAAAAGAGCGACGGGAAGATTCTTCAAAATATATATTTTTTGTTCCACAGAAGAAAGAAAGTCATACAAGTTTGCAATGACAGTGAGTAAATGATGACAGAATTTTTGGGTGAACATTTCCTTTTAAAGAGAAAATGCTAACAATGTCAAATAACAAGTTGTAACAAGGGACATTTCTCTAGTTAATACTATCTATGTTTGATTATTTTATTTTACTTTTTTAATTTCCACTGTATGTTTAGAGTATTTTAACCTCTGATCTCAGGTCAGTGTTGTGCGCACTGCTCCAGAGGGCTTCTGTTTAAGCTCATGTCAGTCTCTGGATAATTGAGGTCTTCCTGGCCTCATCCTCTGCTCTTTCATAAGGTATCATTACAGTGGTGCTTTATCACAGAGTGAGAGAGCTTCTCCGCCTTGACCTTGGCAGATCACACCATTTTCACATTTCCAGGTGTGGAAATGTTCCCAACAGTTTTACAGCATATAAAAGACTTATTAGAAGAACAATTTTCACAGCCAAATGTGTAAAGGTGAGAATGACGGTATTTGTGGCACATTATAAAAGCCTTGTAATTTTGTTAATTATTGTGCACAAACAAAAATGGCCTCATGTACATTGTTATTGTATAAAAAAATATAGTGATTTAAAAATATTTTTCTAATAACAACTTGATAAAAAACAATGAATGTAATTAGATTTTCTTTGTAAGATTTTGTTGGAAAATTAAAATGCAATTCATAAGAAGCC

Function

symbol description
hacl1 Predicted to enable thiamine pyrophosphate binding activity. Predicted to be involved in fatty acid alpha-oxidation. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in peroxisome. Orthologous to human HACL1 (2-hydroxyacyl-CoA lyase 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_07969424_07983149.mRNA False 2952 mRNA 0.45 16 7968328 7983301
TU111314 True 1398 lncRNA 0.34 1 7982169 7983566

Neighbor

gene id symbol gene type direction distance location
CI01000016_07956184_07965721 C16H2ORF66 coding upstream 2388 7956071 ~ 7965940 (+)
CI01000016_07937188_07955977 ANKRD44, ANKRD28B, ANKRD28 coding upstream 11871 7937188 ~ 7956457 (+)
CI01000016_07851297_07854401 NA coding upstream 113718 7850756 ~ 7854610 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S coding upstream 183332 7783987 ~ 7784996 (+)
CI01000016_07759095_07759370 NA coding upstream 207054 7759095 ~ 7761274 (+)
CI01000016_07998560_08008403 COLQ coding downstream 15259 7998560 ~ 8008446 (+)
CI01000016_08034844_08037586 FKBP14 coding downstream 51543 8034844 ~ 8038025 (+)
CI01000016_08090285_08090545 NA coding downstream 106984 8090285 ~ 8090594 (+)
CI01000016_08092843_08098938 CPVL coding downstream 109472 8092773 ~ 8098938 (+)
CI01000016_08205087_08210367 NA coding downstream 221553 8204854 ~ 8211114 (+)
G97788 NA non-coding upstream 61770 7906224 ~ 7906558 (+)
G97747 NA non-coding upstream 109147 7847657 ~ 7859181 (+)
G97746 NA non-coding upstream 120799 7845916 ~ 7847529 (+)
G97745 NA non-coding upstream 140633 7825388 ~ 7827695 (+)
G97826 NA non-coding downstream 75668 8058969 ~ 8063310 (+)
CI01000016_08270091_08279026 HIBADH, HIBADHA, HIBADHB non-coding downstream 267087 8268720 ~ 8279924 (+)
G98151 NA non-coding downstream 359810 8343111 ~ 8343467 (+)
G98152 NA non-coding downstream 363391 8346692 ~ 8346893 (+)
G98155 NA non-coding downstream 374722 8358023 ~ 8358279 (+)
G96389 NA other upstream 807038 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 2560465 5405791 ~ 5407963 (+)
G95792 NA other upstream 2742387 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 3131673 4829592 ~ 4837457 (+)
G97824 NA other downstream 31062 8014363 ~ 8015775 (+)
G98288 NA other downstream 1012797 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 1812330 9795950 ~ 9842576 (+)
G99041 NA other downstream 1941117 9924418 ~ 9925654 (+)
G99410 NA other downstream 2251099 10234400 ~ 10236851 (+)

Expression


Co-expression Network