CI01000016_08205087_08210367


Basic Information

Item Value
gene id CI01000016_08205087_08210367
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8204854 ~ 8211114 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08205087_08210367.mRNA
CAATAAAGACACGTACAGTGTCTTACGGAACAGGACTAGTGCAGTATTTCATATCAACAGGTATGACGTGTGTCGGTAGACCCTCCTCTCTCTCCTGCTGCGTCGCGCGCTCTCGTCCTGAGCTGCTCCAGCTGCTGCCGCTGTCTGCCTGCCTGTGACTGTGCGTGCGTGCGAGTGCGTGCGATCCCCTTTCCGCTCGCCCCGTGCTATTGCTCTTCAATGTAGCAAAGACCATGACAGGCATCGCCGCCGCCTCCTTCTTCTCCAACATTTGCCAGTTCGGGGGCTGCGGACTGCACTTCGAGTCGCTGGCCGAGCTCATCGTGCACATCGAGGATAATCACATCGGGGTTGCACTGTGGTTAGGAATCCCTTTGAATCCCAGCCTGCAGAACTCTTATCCAGTAGAACAGATGTGGGGCGATGGCACGCTATCAGAGGAACTGCATGGAGATTTGCGAGGTCGGGTGGAGAGATGTTGCCGATAGGCCTCATTGCTAACAGCAAATGAGCTTGTGAAGTTTTAAGGTTGTAATATTTTATCACCTTCGAATTTTCCCTCGTCTTCAAGCAAATTCTAGTTTGTGGTTAGTTACCATGCTCTCTAGGGTTTGATTGTTATATGTTACGAAGGCAACGATGTAAATATGGGGAAAGAGAAGTAGGGGTGTGCCTAAACCTTTTACTGTTCGTACTTGTGTGTGTGGGTTCTGTAAGCAACGTGTCCTTGAAAAGATCCCTCCGAGACTCTCGCTGGATGTGACAATTAATGCGGTTCTTTTTCGACTTCCAGCTCTTAAAAATGTGAATTTAAAACTGGCAGGCCGTGGCCTCCGAGGGTTTCACATTAAAAGTGTTAATATGACGTTGAGATGATTTAGGAAGTTGAAAGGGTAACAGTGCTCAGATTTATTTTGATTGTGACTATAGTGTTTAGCTAGCTTAAATCCTCCTGTTGATCAGAGACTATCATAAAAAATACAGTTTACACCATATGCTGAAGCTATTTTTTAACATACTCTGACTTAATCACAGTAAAAATGTCACCTTGTTGGACAGAGGTCCAGTGTTTTTCTTCTATTATTTTATTAATTCAAGTAAAACTACAAAAAAAATGAGAGGTCTTCTGCTTTCAAGATGTCAGCTCTGCAGGCCTCTGAACAATGAACCTCTCTGAGCTTCACTACACTGAGGGCTCCTGGAATGGCTTAAGAAAAAAAATCTCAACGGAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08205087_08210367.mRNA True 1235 mRNA 0.45 3 8204854 8211114

Neighbor

gene id symbol gene type direction distance location
CI01000016_08092843_08098938 CPVL coding upstream 105916 8092773 ~ 8098938 (+)
CI01000016_08090285_08090545 NA coding upstream 114260 8090285 ~ 8090594 (+)
CI01000016_08034844_08037586 FKBP14 coding upstream 166829 8034844 ~ 8038025 (+)
CI01000016_07998560_08008403 COLQ coding upstream 196408 7998560 ~ 8008446 (+)
CI01000016_07969424_07983149 HACL1 coding upstream 221553 7968328 ~ 7983566 (+)
CI01000016_08217170_08228700 JAZF1 coding downstream 5970 8217084 ~ 8228778 (+)
CI01000016_08270091_08279026 HIBADH, HIBADHA, HIBADHB coding downstream 57606 8268720 ~ 8279924 (+)
CI01000016_08285505_08286793 HOXA13B, HOXA13 coding downstream 74045 8285159 ~ 8287361 (+)
CI01000016_08293872_08295500 HOXA11B, HOXA11 coding downstream 82758 8293872 ~ 8295500 (+)
CI01000016_08299340_08301616 HOXA10B coding downstream 88226 8299340 ~ 8301616 (+)
G97826 NA non-coding upstream 141544 8058969 ~ 8063310 (+)
CI01000016_07956184_07965721 C16H2ORF66 non-coding upstream 239173 7956071 ~ 7965940 (+)
G97788 NA non-coding upstream 298296 7906224 ~ 7906558 (+)
G97747 NA non-coding upstream 345673 7847657 ~ 7859181 (+)
G98151 NA non-coding downstream 131997 8343111 ~ 8343467 (+)
G98152 NA non-coding downstream 135578 8346692 ~ 8346893 (+)
G98155 NA non-coding downstream 146909 8358023 ~ 8358279 (+)
G98103 NA non-coding downstream 147531 8358645 ~ 8374582 (+)
G97824 NA other upstream 189079 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 419131 7783987 ~ 7784996 (+)
G96389 NA other upstream 1043564 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 2796991 5405791 ~ 5407963 (+)
G95792 NA other upstream 2978913 5219880 ~ 5225941 (+)
G98288 NA other downstream 784984 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 1584517 9795950 ~ 9842576 (+)
G99041 NA other downstream 1713304 9924418 ~ 9925654 (+)
G99410 NA other downstream 2023286 10234400 ~ 10236851 (+)
G99456 NA other downstream 2083277 10294391 ~ 10298904 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021650 NA coding CM030130.1 CM030130.1 23934484 ~ 23942615 (-)