CI01000016_08293872_08295500 (HOXA11B, HOXA11)


Basic Information

Item Value
gene id CI01000016_08293872_08295500
gene name HOXA11B, HOXA11
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8293872 ~ 8295500 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08293872_08295500.mRNA
ATGGATTTTGATGAGCGGGTACCCGTTGGGTCTAACATGTATTTGCCCGGCTGTACTTATTACGTGTCTGGAACGGAATTTTCCAGCCTTCCTCCTTTTCTGCCCCAGACCCCGTCTTCTTGCCCCATGACATACTCATACTCCACGTCCAGTTTGCCACAAGTTCAGAGCGTTAGAGAGGTATCTTTCAGGGACTATGCCATTGACACGTCCAGTAAGTGGCACTCCAGGGGCAATTTGCCACACTGCTACGCGACCGAAGACATGGTGCACAGGGACTGCCTGTCCAATCCCGGAGCTTTGGGGGACATGTTATCGAAAAATAACTCGGTTCTTTACCACTCCAACACGAGCCATGCGTCCAACGTTTATGGCAGCGTAGGGAGGAACGGAGTGCTTCCCCAAGCATTTGACCAGTTTTTCGAGACAGCGTACGGCAACGTGGAAAATCAGCCGAGCGAGCACCCGGTGGACAGAGCAACCAGCAAGGCGCCTCCTCCGCCCGCGGATTCAGTCAGCGACAGTTGTCGGGGAACGGATGAGACAGAGCGGTGTGAAGAAACGAGCAGCCCGGAGCCATCTTCCGGTAACAACGAAGAGAAATTCAGCGGCAGCAGCAATGGACAGAAGACACGGAAAAAGAGGTGTCCTTACACAAAATATCAGATCAGAGAGCTGGAGAGAGAATTTTTCTTCAGTGTTTACATCAACAAAGAAAAAAGGCTACAGCTTTCCAGAATGCTCAACCTCACCGACCGTCAGGTCAAAATATGGTTTCAAAACAGAAGAATGAAAGAAAAAAAACTAAACAGAGACCGTTTGCAGTATTACACCACGAACCCTTTGCTTTAG

Function

symbol description
hoxa11b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; chondroblast; mesenchyme; pectoral fin bud; and pectoral fin field. Human ortholog(s) of this gene implicated in radioulnar synostosis. Orthologous to human HOXA11 (homeobox A11).
hoxa11 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including embryonic morphogenesis; positive regulation of cell differentiation; and regulation of transcription, DNA-templated. Predicted to act upstream of or within several processes, including animal organ development; embryonic limb morphogenesis; and regionalization. Located in nucleoplasm. Implicated in radioulnar synostosis.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09296 HOX_11; homeobox protein HoxC/D11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08293872_08295500.mRNA True 852 mRNA 0.50 2 8293872 8295500

Neighbor

gene id symbol gene type direction distance location
CI01000016_08285505_08286793 HOXA13B, HOXA13 coding upstream 6511 8285159 ~ 8287361 (+)
CI01000016_08270091_08279026 HIBADH, HIBADHA, HIBADHB coding upstream 13948 8268720 ~ 8279924 (+)
CI01000016_08217170_08228700 JAZF1 coding upstream 65094 8217084 ~ 8228778 (+)
CI01000016_08205087_08210367 NA coding upstream 82758 8204854 ~ 8211114 (+)
CI01000016_08092843_08098938 CPVL coding upstream 194934 8092773 ~ 8098938 (+)
CI01000016_08299340_08301616 HOXA10B coding downstream 3840 8299340 ~ 8301616 (+)
CI01000016_08304658_08306198 HOXA9B coding downstream 7414 8302914 ~ 8306792 (+)
CI01000016_08315282_08316952 HOXA2B, HOXA2 coding downstream 19473 8314973 ~ 8317178 (+)
CI01000016_08323079_08336573 SKAP2 coding downstream 27579 8323079 ~ 8336687 (+)
CI01000016_08390421_08396972 NA coding downstream 94789 8390289 ~ 8397755 (+)
G97826 NA non-coding upstream 230562 8058969 ~ 8063310 (+)
CI01000016_07969424_07983149 HACL1 non-coding upstream 310306 7968328 ~ 7983566 (+)
CI01000016_07956184_07965721 C16H2ORF66 non-coding upstream 328191 7956071 ~ 7965940 (+)
G97788 NA non-coding upstream 387314 7906224 ~ 7906558 (+)
G98151 NA non-coding downstream 47611 8343111 ~ 8343467 (+)
G98152 NA non-coding downstream 51192 8346692 ~ 8346893 (+)
G98155 NA non-coding downstream 62523 8358023 ~ 8358279 (+)
G98103 NA non-coding downstream 63145 8358645 ~ 8374582 (+)
G98169 NA non-coding downstream 81021 8376521 ~ 8376813 (+)
G97824 NA other upstream 278097 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 508149 7783987 ~ 7784996 (+)
G96389 NA other upstream 1132582 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 2886009 5405791 ~ 5407963 (+)
G95792 NA other upstream 3067931 5219880 ~ 5225941 (+)
G98288 NA other downstream 700598 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 1500131 9795950 ~ 9842576 (+)
G99041 NA other downstream 1628918 9924418 ~ 9925654 (+)
G99410 NA other downstream 1938900 10234400 ~ 10236851 (+)
G99456 NA other downstream 1998891 10294391 ~ 10298904 (+)

Expression


Co-expression Network