CI01000016_08379971_08382899 (CBX3B)


Basic Information

Item Value
gene id CI01000016_08379971_08382899
gene name CBX3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8379283 ~ 8384036 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08379971_08382899.mRNA
AGTGTCCTTTGACGATATTACATTCGTGACGTCAACACAACATGTAGGTATTTTCCCTATGTATCCACATCTTTCCTAAACTGAGACGCAAAAGAAGTTTCTATGTACAACAAATCACGAACGTTCGTTTTTTAACTTACAAAAACTAGATTTTAAACTGCAACTGTTGCCAATATATATAGTAAAATATATTATTACCTACAACTCGTCTAAGGGTAACGCCTCTGAACGCGTTTTACGCTAAATTATCTAGTGTCAGATTAAACTCGCCCTAAAAAAAACCGTTTATGTGCGCAGAGAAATTCAGCCAGGTCTTGCTCTCGGGATGCGCCTTTAAGGATTCCTCCCCCGGCTTTCCTGAACTGACCTCTTCCCTTTGAAACCACTTCCTCCCCTTCTCCCAATCGGCCATGTTTAATTTGACTCATTCATGAAAAGTTATGTAAACACAACAGTAAAGCCATGATCGTGAAGGCGACATAGTAAGCAATGCTAGATTACTGAACAGTATTGTGATCTTCCGCGTGGACGCACCGCGTTGTTTGTACAAACTGACATTTGCACGAGCATTAATCACCAGCAGTGGGAATAAAAGAATAGCGCGTGAACTGCGCGTGAGGCATCGGCAGGTGGGCACGCGCACTTATCAAATGGACAGCAGTGGCGTAGAAAGAATATAACTGAATACAACAAACAACCATTCATAATATTATCCTGCTTGGTCAGAGACTGTGAAAGTTTAGCTAGTGGGAAATGATACGTCATACGTCAAGCAGTGACTTCCCTGGCAGCGACGACGGATTGTTGCCATTGTTTATTTAAGGAATACCTTGTATTTCTTCATGTCAGATGCAACATTGCTTGATACATTAACAGTAAACATACAAATACATAAGTCTCAAGTGGAAAATTATTTTAAAATTCCTCCGACTTTATTGTTAGAACGATAATTCTATATATGTAAGTTTTGTATAATGTGATATTCTGTAAATCATCGTCACTTCGTCTCTTCCGGTCAAATTATCCTATTTTATTAGTTATATGTCTGCTAAACCTAATATAAATGCTTTATTATAGATTTTGAAATACTTAAGCCTTTGAAAATAATATTAAATGGTGTGTTGTTTATAGGAAATCATGAGGAAAAAGCAGAATGTGAAAAACAGGAAAGCAGAAGAGACAACAGTTGTCCAAGAGTTTGCAGTGGAAAAAATTATCCGCAGAAGAGTCAACGAGGGAAAAGTTGAATACTATCTAAAGTGGAAAGGCTTTACAGATGCAGAGAATACCTGGGAGCCAGAGGACAACCTGGATTGTCCTGAGCTGATAGAGGAGTTTCTCAGAAACCTAAATGTCTCAGGAGAAACAGATGAAGAGGGATGTCAATCTCTAGCCCATGAGGTCCAGCCCAAGCAAGAGTTAACTGAGCTAGATGCTGATATGGCTCACCAGCAGCCTCAGGAGGACCTCATTGAGAGAGGTAATGAGGAGGTTGGTGATCACAGCGCTGAGATCCCAGCAGGCCAGTCCAGCCACCCAGAACCAGACTGCATCATCGGATGCACAGACCAAAAAGGAGAGCTCATGTTCCTCATCAAGTGGAAAAACACAGATGAGGTAGCTTTACTATCAGCCGGGGAGGCCAGTAAAAAGTGGCCTCAGATGGTAATCCGCTTTTACGAGGACAAGCTGACCTGGCATGGTGAAGACGAGCAGTGAGAGAGAGAAATATGTAGCAGTGGATACTACTGTACCTCCTGGCAGCTTTACACATACACAAACACTGTGGCATAAGTTTACTGTTTGACGTACCGTATAGTGTGTGAATCCACACCCCAATGTGAAGCTCTTCCTAACACACTAATCTGTAGAAATGTGAGTGGAGTATTAGAGCGCTACTGTTGTGTACAAGTGGTTTATTAGTCGAATGTTGTTGTATCTCTTGGTCTGTTGTTTGAAAATTCACTAGTGATGTTCATCCTTCTGTCCTCTTTGTTACTATGATCTGAACTGTGATTTAACATAGGATATGACGACAGATGGTACAATAACTGCTGGAGAGGAACTGTTTGATGTGTAGATGTACTATAAACCCCCTGGTTACGCACTTACTCGAGTTATACTGTGATGAATCCCGTGATCTGTGAGGGCGTATAGTGTGGCTCACGCGTAGATTTGCACAAAACAGATTCTAGAATGTAGCCTATACAATCACATTTTTGTGAACAACACGCTTGTTGGTTAGTGTCACTTTCATAGCGGTAGTGTGATTAGGCCATTTAGGTTTCGAGGTTTTGTGTTTAAGACATTTGTCTTGTAGTTTCACTCTCTGGCTTCCTGTTTTCTGTAAAAATCACTGTTAACATTAAATCTCAAGTGAGCAATTTCTATAGGTGCTTTAAATAAA

Function

symbol description
cbx3b Predicted to be located in nucleus. Orthologous to human CBX3 (chromobox 3).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11586 CBX3, HP1G; chromobox protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08379971_08382899.mRNA True 2407 mRNA 0.41 4 8379283 8384036

Neighbor

gene id symbol gene type direction distance location
CI01000016_08374296_08376159 SNX10B coding downstream 3124 8374250 ~ 8376159 (-)
CI01000016_08232249_08261533 TAX1BP1, TAX1BP1B coding downstream 117750 8231563 ~ 8261533 (-)
CI01000016_08229709_08230108 NA coding downstream 149175 8229460 ~ 8230108 (-)
CI01000016_08111153_08185623 CREB5 coding downstream 193660 8111153 ~ 8185623 (-)
CI01000016_08042288_08066945 CHN2 coding downstream 312078 8040556 ~ 8067205 (-)
CI01000016_08385655_08387187 NA coding upstream 1540 8385576 ~ 8387661 (-)
CI01000016_08421119_08444481 PDE11AL coding upstream 37061 8421097 ~ 8445102 (-)
CI01000016_08570850_08582638 MPP6, MPP6A coding upstream 186257 8570293 ~ 8582907 (-)
CI01000016_08598259_08602660 NPY coding upstream 214195 8598231 ~ 8602660 (-)
CI01000016_08605369_08623062 STK31 coding upstream 221211 8605247 ~ 8623062 (-)
G98530 NA non-coding downstream 23588 8355495 ~ 8355695 (-)
G98529 NA non-coding downstream 26703 8352320 ~ 8352580 (-)
G98512 NA non-coding downstream 56907 8322155 ~ 8322376 (-)
G98511 NA non-coding downstream 72701 8304554 ~ 8306582 (-)
G98501 NA non-coding downstream 83862 8293117 ~ 8295421 (-)
G98541 NA non-coding upstream 8052 8392088 ~ 8403030 (-)
G98545 NA non-coding upstream 21961 8405997 ~ 8406296 (-)
G98521 NA non-coding upstream 35308 8419344 ~ 8420716 (-)
G98558 NA non-coding upstream 75039 8459075 ~ 8459357 (-)
G98559 NA non-coding upstream 76320 8460356 ~ 8460567 (-)
G97341 NA other downstream 2219562 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 2961066 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3048437 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 3455879 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 4448232 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 504797 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 552753 8925960 ~ 8945229 (-)
G98679 NA other upstream 850960 9234996 ~ 9239929 (-)
G98691 NA other upstream 872066 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 1125586 9509622 ~ 9512428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 unknown NC_056714.1 CM032083.1 8298789 ~ 8302245 (-)