CI01000016_08513514_08545976 (OSBPL3B, OSBPL3)


Basic Information

Item Value
gene id CI01000016_08513514_08545976
gene name OSBPL3B, OSBPL3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8513514 ~ 8546137 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08513514_08545976.mRNA
GACAACTGGGAGATCGTCGAGGGCTTGCGTGGTGGTCTTTCCATTGTTCAGGAGCCAGAGAAGCAGGCCGGCTACATGCTGAAGAAAAGAAAATGGCCTATGAAAGGTTGGCACAAGAGATTCTTCCACTTGGACAAGGGCATTTTGAAGTACGCCAAATGTGCAGCTGATGTCGAAAAAGGCAAGCTCCACGGCTGCATTGATGTGGGGCTGTCTGTCATGGCCATTAAGAAGAAAGCCAAGTGCATTGATCTGGATGCTGAAGAAAACATTTATCACTTAAAGATCAAGTCCCAGGAGCTGTTTGATGAATGGGTCTCTAAGCTACGTCACCACAGACTTTACAGGCAGAATGAGATTGCAATGTTCCCTCATGAGAAAACACTCTTTCACCCTCATTACCCCCTCCCCTCCTCCCCCACGATATCCGACAGTCAGTCCATCAGAAAGGCCAAGGTGACCGCCTGGCTCCAGTCTTCTGATGACATGGACAGGTGCACCAAAGAACTCTCTGTATGTGAGGCTCAGCTCCTGGAACTGAATCACTTGTTAAGAAGTATGGAGGTGTTACACCGCACCTACTCCGCCCCAGCCATCAACGCTCTGCAGGCTTCAACGTACGACAGCCCGAAAAAAGAGAAGAGACATCCCAGAAAATGGCGTTCCAAGAATTATGGGAAAGACAACAAAACAACCCTGCAGGTTCCAAGCTGTATTTCAGCAGGCTCTATCCGTCTCCATGCATCCAATCCCAACCTCTCTTCTGTAGACCTGACCAATGAGAAGAGTTACCATGAACCTCTAGACTCGCCTATAGATGTATCCAAACTGCAGGAAGACTTCTGCCGTGTCGCAAACAACCTTCATACAACCATGAAATCAGCCCTGTGCATGCTGACTACAGAGAAAGAGAGACTTAAACAGATGCTGGAGCACGAGTCTTGTCCCTCCCCCTCGGCCCAGCTCCTAGGACTGAAGAGTGCCCTGACTGCTGCTGTAACACAGAACACTGAGCTGAGAGAGCGTCTGTGCAAGATTCACGCTGAGTCGCACATCTCTGAGCCCTCTGTCCATATAAACCTCAGTCCTGGCCCCCTGCAGAAGCAAGACTCCGCTGATGGTTCCCACCCCCTTGTCCACCAGGCGTCCAATGAGAGCAGAGCTTCCATTACAGAGTCTCTTTCGGAGTTCTTTGATGCACAGGAAGTGCTGCTGTCAGCTAGTTCTTCAGAAAATGAGCCTTCGGAAGATGACTCATATATCAGTGACATCAGTGACAACGTGTCCATGGATAACTTCAGCAACGAGGCAGAGAATGAGAGACTCAATACAGGTTGCGTAGAGAACGGTGGTTCTCAAGGACAGCGGCGGTCTTGTCTTCCCTCCCCAAGTCCCAATACCAGCAACATCAGCCTGTGGAACATCCTGAAGAACAACATCGGGAAGGACCTGTCTAAAGTAGCCATGCCTGTTCAACTCAATGAACCGCTCAACACACTGCAGAGACTGTGTGAGGAACTGGAGTACAGCGAACTGCTGGACAAGGCCGCACACACACAGGACCCATTTGAACGCATGGTGTACATCGCTACATTTGCCGTGTCTGGCTATGCTTCCAGTTACTACAGAGCAGGAGGAAAACCCTTTAATCCAGTGTTGGGCGAAACCTACGAGTGTGATCGCCCAGACAAAGGCTTTCGCTTTGTTGCCGAGCAGGTCAGCCATCACCCCCCCATATCAGCATGTCACGCTGACTCTAAAAACTTCATCTTTTGGCAAGATGTGAGGTGGAGGAATAAGTTCTGGGGAAAGTCCATGGAGATTGTACCTGTAGGAAGTACTCATGTGGTTCTCCCTGGCTTTGGGGATCATTATGAGTGGAATAAGGTGACATCATGTATCCACAACATTCTGAGTGGGCAGCGCTGGATCGAGCACTACGGCGAAATCTCCATCAAAAACTCCAACAGTGAGAAATGCCAGTGTAAAGTCACCTTCATCAAGGCCAAGTACTGGAACTCCAGCATGAATGAGGTGGAGGGAGTTGTCACAGACCACAAAGGAAAAGTCATCCAAAAACTGTTTGGGAAATGGCACGAGGGAATGTACTGCGGCAGCCCACCCTCTGCTACCTGCATCTGGAGGACGAATCCCATGCCTTCTGATTATGAGCAGTACTATGGTTTCACTAAGTTTGCTATGGAGCTCAATGAGCTCGACCCTCTTACCAAACCACATCTTCCACCCACGGACACCAGACTACGACTCGACCAGAGGTTATTGGAGGAAGGGAATGTTGAATCTGCAGAGGTGCAGAAGCAGAGGATCGAACAGCTGCAGCGAGAGAGACGCAGAGTCCTGGAGGAGAACCACATGACACACCAACCTCGATTCTTCCAGAAGTCCAAAGACGACACCTGGGTGAGCAACAACACTTACTGGGACTTAAGGAAAGAACCTGGATTCACTAACCTTGACTGTCCAGTCCTCTGCTACTGCGATGAATCAGTTTGCATGCAAACGTCATCCCTGAGCTGTTTGTGTAGACCTTTTTTAATGGCTTTTATAGTGTTTGATGAAAATCCTTGACAGCCCACATAGTTTTTCCTGTCATATGCAACACTGGATATTATGAGTCATTGAGTTAAAAGGGAAATTTTTCCACACGACTGCAGTCCATCACAGTCTTGTGCAGTTTTGGAAAAAATAGTGTTGCTAATCCTATAACTAGATTAAGAGAATCAAATTAA

Function

symbol description
osbpl3b Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBPL3 (oxysterol binding protein like 3).
osbpl3 Enables cholesterol binding activity. Predicted to be involved in bile acid biosynthetic process. Located in several cellular components, including cytosol; nuclear membrane; and perinuclear endoplasmic reticulum.

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K20463 OSBPL3_6_7, ORP3_6_7; oxysterol-binding protein-related protein 3/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08513514_08545976.mRNA True 2750 mRNA 0.49 22 8513514 8546137

Neighbor

gene id symbol gene type direction distance location
CI01000016_08450823_08453343 NA coding upstream 60137 8450628 ~ 8453377 (+)
CI01000016_08390421_08396972 NA coding upstream 115759 8390289 ~ 8397755 (+)
CI01000016_08323079_08336573 SKAP2 coding upstream 176827 8323079 ~ 8336687 (+)
CI01000016_08315282_08316952 HOXA2B, HOXA2 coding upstream 196336 8314973 ~ 8317178 (+)
CI01000016_08304658_08306198 HOXA9B coding upstream 206722 8302914 ~ 8306792 (+)
CI01000016_08553934_08565167 DFNA5 coding downstream 6706 8552843 ~ 8565246 (+)
CI01000016_08628196_08630801 NA coding downstream 82059 8628196 ~ 8631378 (+)
CI01000016_08675783_08684401 KCNJ14 coding downstream 127274 8673411 ~ 8684506 (+)
CI01000016_08696516_08734418 MYH14 coding downstream 150379 8696516 ~ 8734660 (+)
CI01000016_08748359_08750572 NA coding downstream 202222 8748359 ~ 8750736 (+)
G98195 NA non-coding upstream 54443 8458828 ~ 8459071 (+)
G98193 NA non-coding upstream 55348 8457949 ~ 8458166 (+)
G98177 NA non-coding upstream 107218 8406065 ~ 8406296 (+)
G98169 NA non-coding upstream 136701 8376521 ~ 8376813 (+)
G98098 NA non-coding downstream 20692 8566829 ~ 8569687 (+)
G98220 NA non-coding downstream 58461 8604598 ~ 8604812 (+)
G98221 NA non-coding downstream 59086 8605223 ~ 8605440 (+)
G98222 NA non-coding downstream 61265 8607402 ~ 8607866 (+)
G98223 NA non-coding downstream 66827 8612964 ~ 8613740 (+)
G97824 NA other upstream 497739 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 727791 7783987 ~ 7784996 (+)
G96389 NA other upstream 1352224 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3105651 5405791 ~ 5407963 (+)
G95792 NA other upstream 3287573 5219880 ~ 5225941 (+)
G98288 NA other downstream 449961 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 1249494 9795950 ~ 9842576 (+)
G99041 NA other downstream 1378281 9924418 ~ 9925654 (+)
G99410 NA other downstream 1688263 10234400 ~ 10236851 (+)
G99456 NA other downstream 1748254 10294391 ~ 10298904 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009860 osbpl3b coding NC_007127.7 CM002900.2 21242491 ~ 21418775 (+)
bowfin (Amia calva) AMCG00021629 NA coding CM030130.1 CM030130.1 23265750 ~ 23303746 (-)