CI01000016_08628196_08630801


Basic Information

Item Value
gene id CI01000016_08628196_08630801
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8628196 ~ 8631378 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08628196_08630801.mRNA
GAAAACAAAGTAAGAAAAGAAAAACCGTCTTACAAACGGCTACGACGAAAAAACGACTGGACCAGCAGAGGGCTCAAACCAGAGTAAACATCGGCGTTGCTTTTCCACGCTGGAGACAACTGCGGGACTCAAAGGGACTGAAAACTGACGCGATGGTTGCAGTTTTTCTTTTGGATAGTTACGAGAAAACTACAGCATCCACACCTTCGGTGCATGGACTCCTTAAACCACCACCACCAGTTTCGACTAATATTTCCGACCGCAAAGGGCAGGAGATGAAGTCTGAGGGTTTTGGTCTTTGGAGCTCAGTTTCACTTAAACTTGAGCAAGTGCAAGAAGTGGGTGAAGGAAATGATTCGTCCTCCTTCAGTGTGGACATCATACAAGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACACAGATGAGTCTGAGTTTTGGTGCAGTGGCAGCGTGCAGCAAGATCCAGAGATGTCTGGGGGTGTAGAAGCTAGTCACCCAGTTTCACTTAATTTCAACAAATTAAAAGAAGTGGATCATTACTGTGGAAATGGCAAGTAATCTGTAATATTGTTATATGAATTTAATCTTATCATGCTGATATGAAAGACTTATTGGATAGTTTTATGACCTTAAATAAGCACATTAATTAAAAGAATTTAAAAAAAAAAAATGTAGGATTGCACCGATATTAAAATTCTGGTTAAAATACTGGGGCCAGGTGCATAAACTTAGTCTCTATGTTAAGACCGTGTCTTGAAAACTAGTCTGACCAACTAGCAGTTAACTAGGGGTAATCAGTCTTATTAATTACTTAAAGTTATGACCAGTCTTAAAGAAACAAATTAGATGACTAAAGGCTGGAATACAGTACACGACTTTTGCCCCAATTTACATTCTGGACAAGTTGACGCTAGCTGCCGAAAGTCAGAGCCAGTCTGCAGATTGGATATTGACAGATTTCACAGAACATCGTGTAGCGTATGATGGTCACAGACTTCGTCTTTTTTTTTTTATTAGCTTCAAAGTTTGATTACATCCAGTCAGGATATCAAACATGTTTGATATTTTGATCAAACAGTTTATGCAACCGGCCACTGATGTCAGTAATTATTTTCATCACTACCACGTTGTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08628196_08630801.mRNA True 1719 mRNA 0.43 4 8628196 8631378

Neighbor

gene id symbol gene type direction distance location
CI01000016_08553934_08565167 DFNA5 coding upstream 62950 8552843 ~ 8565246 (+)
CI01000016_08513514_08545976 OSBPL3B, OSBPL3 coding upstream 82059 8513514 ~ 8546137 (+)
CI01000016_08450823_08453343 NA coding upstream 174819 8450628 ~ 8453377 (+)
CI01000016_08390421_08396972 NA coding upstream 230441 8390289 ~ 8397755 (+)
CI01000016_08323079_08336573 SKAP2 coding upstream 291509 8323079 ~ 8336687 (+)
CI01000016_08675783_08684401 KCNJ14 coding downstream 42033 8673411 ~ 8684506 (+)
CI01000016_08696516_08734418 MYH14 coding downstream 65138 8696516 ~ 8734660 (+)
CI01000016_08748359_08750572 NA coding downstream 116981 8748359 ~ 8750736 (+)
CI01000016_08752386_08753821 RPL18.L, RPL18.S, RPL18 coding downstream 121008 8752386 ~ 8753821 (+)
CI01000016_08766170_08768621 LAG3 coding downstream 134792 8766170 ~ 8768778 (+)
G98225 NA non-coding upstream 9342 8618536 ~ 8618854 (+)
G98223 NA non-coding upstream 14456 8612964 ~ 8613740 (+)
G98222 NA non-coding upstream 20330 8607402 ~ 8607866 (+)
G98221 NA non-coding upstream 22756 8605223 ~ 8605440 (+)
G98220 NA non-coding upstream 23384 8604598 ~ 8604812 (+)
G98106 NA non-coding downstream 1545 8632923 ~ 8634430 (+)
G98230 NA non-coding downstream 10810 8642188 ~ 8642410 (+)
G98231 NA non-coding downstream 11383 8642761 ~ 8642978 (+)
G98294 NA non-coding downstream 24384 8655762 ~ 8656133 (+)
G98307 NA non-coding downstream 40380 8671758 ~ 8689219 (+)
G97824 NA other upstream 612421 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 842473 7783987 ~ 7784996 (+)
G96389 NA other upstream 1466906 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3220333 5405791 ~ 5407963 (+)
G95792 NA other upstream 3402255 5219880 ~ 5225941 (+)
G98288 NA other downstream 364720 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 1164253 9795950 ~ 9842576 (+)
G99041 NA other downstream 1293040 9924418 ~ 9925654 (+)
G99410 NA other downstream 1603022 10234400 ~ 10236851 (+)
G99456 NA other downstream 1663013 10294391 ~ 10298904 (+)

Expression


Co-expression Network