CI01000016_08766170_08768621 (LAG3)


Basic Information

Item Value
gene id CI01000016_08766170_08768621
gene name LAG3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8766170 ~ 8768778 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08766170_08768621.mRNA
ATGACACCGTTTCTGATTGTTCTGGGATTAGCGCTGGTTTTTGAAGGTGGTCAGTGTCAGGAACGTGAAGTGTTGGTGGCTCAAGGATCTGTAGCAGTGCTGCCATGTGTGGACGAGTCCTCTGCGGTCTCATATCCTACTGCAGTTTACTGGAGCAGGATAGTTGATGGTGTAATGAAAACAGTTTGGCGGCGACAGAAGAGCGGGTTAGAGTTTCGTCCGGTTAGAGACCCACCACGTGCTAACTGCCCCGTTCCCAACTTTGGGAAGGCCGATTACAGCCTTCACATAGCTGGAACAACATTTGAAGATGGAGGAAAGTACGTCTGTGAGGTTGAGGGAAGGACTCGGATGGCGAAGATCATCACACTCAGGGTTATAAGAGCATCATTTTCTCCAGCCATTGTGGTTGAGGGCTCAAGAACAGAGGCAATGTGTGATGTTAGTCCTGGGACAAAATCTGTAAAAGTTAATTGGAAACGAAACGGCAAAGTTATAAGAAGAGCCAGCCTCTCTAGCGTGTCTCAAAGAGATGCCGGAAACTGGACCTGTCAGGTATCACACAATGGTGTGGTAGTAGAGGCAACTATATCCCTACAGGTCAAAGGAATCGCCACCCCTCAGGATGACTCTTCAGTGGTGTATGCTGCTATCGGCTCCCCTGTCTCCTTGCCCTGCCTGTTTACTGATGGTCTAATCCCAAACACTGTGAGCTGGAACAGAATCTCCTCAACAACACGCCTTCCTTCATCTTTCAACTGGTCTCTGGGGTCCTCAGCATCAGCCACTATACAGAGAGTGGAGGATGGAGATGAAGGGACGTATATGTGCTCAGGAGAGATGGAGGGATTAGATAGAGGGAGAATTAAAGTACAAAGAAGAATGGAGCTAGTGGTTACTCGAGTTTTGAGCTCCTCAGCATCCAGTGGTAACGGACCCGTCACCCTGACCTGCCATCTCAGCAACTCCGACCAGATCACTTCCTATGAATGGCTCCGTGTAACTTATGGACCAAACGACACTCAAACGGTGACCCCTGTGACCTCTGTTCAAAAGACAGAGAGCTACAAGATTAAGCAAGTGACTGAGAAAGATGCTGGTGAATGGGTGTGTCGGTACTATGGGAAACAAGGAGTTCTGGGGAATGTGACTTATGAACTTCACATTATGGGTGCTGTAAAGAGCGAAAAGTCAAGTTCCGGCAATAAAACCGCTATGGTGATGGGATTAGGATTTTTGTTCTTGGTGATATTCCTGATTTTGTTCCAGATGTACAGAAACTATCGCAGGCGATGGAAACCATCGTCCATCAGGCCGCCACTGAACGAGAGCACAGAGAAAGAAGCAGGCCAAAAATGGCTGAACCTTGTGTTGGACACCCGAAAACAGTGTGTGTGTAAATTTGTGTTTTTCATGGAAATTTTGTAAATGTCTGTGTTTTACTCTATGTTAATATGTGTGTTTTAAAAGCAGACAATTGTAGCAGTCCATTTAAACTGTAAATATATTACCGACCTATAAATGTATACATTTTGTATAAACTAATTTTGGTGCAAATATATTTTCAAATGTAAAATCTATGTAA

Function

symbol description
lag3 Enables MHC class II protein binding activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; negative regulation of regulatory T cell differentiation; and plasmacytoid dendritic cell activation. Predicted to act upstream of or within negative regulation of T cell activation; negative regulation of interleukin-2 production; and positive regulation of natural killer cell mediated cytotoxicity. Predicted to be located in extracellular region.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08766170_08768621.mRNA True 1585 mRNA 0.45 8 8766170 8768778

Neighbor

gene id symbol gene type direction distance location
CI01000016_08752386_08753821 RPL18.L, RPL18.S, RPL18 coding upstream 12349 8752386 ~ 8753821 (+)
CI01000016_08748359_08750572 NA coding upstream 15434 8748359 ~ 8750736 (+)
CI01000016_08696516_08734418 MYH14 coding upstream 31510 8696516 ~ 8734660 (+)
CI01000016_08675783_08684401 KCNJ14 coding upstream 81664 8673411 ~ 8684506 (+)
CI01000016_08628196_08630801 NA coding upstream 134792 8628196 ~ 8631378 (+)
CI01000016_08817749_08824067 NA coding downstream 48971 8817749 ~ 8824078 (+)
CI01000016_08916022_08916606 NA coding downstream 146250 8915028 ~ 8916667 (+)
CI01000016_09026732_09050431 NA coding downstream 257954 9026732 ~ 9050838 (+)
CI01000016_09138227_09156795 NA coding downstream 368656 9137434 ~ 9157472 (+)
CI01000016_09181426_09182326 NA coding downstream 412648 9181426 ~ 9182326 (+)
G98315 NA non-coding upstream 3201 8762713 ~ 8762969 (+)
G98307 NA non-coding upstream 76951 8671758 ~ 8689219 (+)
G98294 NA non-coding upstream 110037 8655762 ~ 8656133 (+)
G98231 NA non-coding upstream 123192 8642761 ~ 8642978 (+)
G98230 NA non-coding upstream 123760 8642188 ~ 8642410 (+)
G98320 NA non-coding downstream 9765 8778543 ~ 8778763 (+)
G98321 NA non-coding downstream 11789 8780567 ~ 8780906 (+)
G98256 NA non-coding downstream 14835 8783613 ~ 8800681 (+)
G98317 NA non-coding downstream 46858 8815636 ~ 8816240 (+)
G98318 NA non-coding downstream 47636 8816414 ~ 8816982 (+)
G97824 NA other upstream 750395 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 980447 7783987 ~ 7784996 (+)
G96389 NA other upstream 1604880 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3358307 5405791 ~ 5407963 (+)
G95792 NA other upstream 3540229 5219880 ~ 5225941 (+)
G98288 NA other downstream 227320 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 1026853 9795950 ~ 9842576 (+)
G99041 NA other downstream 1155640 9924418 ~ 9925654 (+)
G99410 NA other downstream 1465622 10234400 ~ 10236851 (+)
G99456 NA other downstream 1525613 10294391 ~ 10298904 (+)

Expression


Co-expression Network