CI01000016_08800360_08805384


Basic Information

Item Value
gene id CI01000016_08800360_08805384
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8798407 ~ 8805384 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08800360_08805384.mRNA
ATGAGGAAATGTCAGCTCTGGACTTGTGTATTGCTGATTCTAATCAGCCAGTCATATATAATATCAGTTAGTGGAGCGGAGAATGGAAGTTGTCCTGAAGATCAATACTGGAATTCGAAAGGATTCTGCTGTAATAAATGTCTTGCAGGGTTTAAGCTGAAAGAGAAATGCCCTGAACGTTTGATGAGGTCAGAATGTGAGAAATGTGAGGATGGAACCTTCCTAGAGAAACCAAATTACTCTATAAACTGCTTCAGATGCCAGGAGTGCAAAAAACCCCATTCCATAGAGAAATCAAAATGTACGCATGAAACCAATAGGGTGTGTGGGTGTGTGAAAGGATATTACAAGAAGACTTTATCCGCCTCGGACTGGGAATGTTCTCGCTGTAAGGAGTGTGGACCTGGACAGGAGAAAACTGGAGATTGTGGGGAGGAACAGAATACACTGTGTAAGTGCATAGAAAATCATTACCTTGCCAAGGATAAAAAGTCCTGTGAACCATGCGTCAAATGTCAGACGGGGTGTGAACACTTGTGCATACCCAGCACTACACCAGTGCTCATTAGATCCGCCAAACCAACAACTTCGTCAGACACATTACCTCAAATACTGGTTCCCATTTGTGCATGTATCACGGTTGTAGCTTTGGGAGTGTTTATGTTATATGAAGGCCTCAGACTTTGGAGGAAGAGGAATCGTGCTTTGTCATCGCAGACATCATCACCTGCTCCCGAAGATCAGACATTGATTATCACGATCCCACCAGACAAAATAAATGAGAGTGCTCCTTTTACAAATCAGCCGTGCGAACCTGAACAGCACAGAAAACTCCCAGACTGCGTCCCAAGAGAGATCAAAATTCATGAATTCTTCTATTTTGTGCTGGACGAGGTCCCTGTCGGACGATTTAAAGAACTGGTACGTCAGCTTGGCGTTTCTGAGCAGAACATTGAAAGGGCAGAACAAGACAACCGGAAGTACAAGGATGCCCAATACCAGATGCTGAAGGTTTGGAGTGACAGTGGCAGTGGAGGAGGGAACAATGTTTTGCCATGTCACCGCATCCAGATGTTCATCGAAACATTGAGGGACATGTATTTGGTTAACTGTGCGGACAACATCGAGAACAGGTTCCTTTCGCAGGACACAAGCGCTCCATAATGATTCCATTGGAAAAGAATGGAGAACAGGGCATTAATAGAGATCTTAACCTTCCACTAAATTCCATTGGATTCCTTTGAAAGTGGAAGTGCATCTACAGCTGTATTACTGGATAACACCATGCCATATTTCCAGTTGTCTGAAGATTTCACACTAAAAATGTTTTATGAACATGCATATATTCTTGTAGTATGTATGTAGTGTTGTGTGTAAATATTTCATCAAGGCTTTTTCTGGTGCAGTTAAAGTTTATATATATATATATATATATGAACAAGGGTGGTGGGGTGGTTGGGGTTTGGGTTGTCATTTTTTACAAATTTAATGGAGATGACATAATCATGGATATTCTCTGCCAGTTCTCCTTATAATAGCACAAAACTCACAAAAACATGTCCAGTTCACATTTCACCATAAAAAATATATACACTACTGTTCAAAAGCTGGAGATCAATAAGGTTTTTTATGAAAAGACAATCTTTTTTGAAAGAAGATTATGTTCCCTAAGGCTGCATTTATTTGATCAAATTATTGTGAAAACAATAATAATGTGAAGTATTACTTTTAAATTTAACGTAACCATTTTAATTTTTTATATAGTTGAACATTTTATTCTTTCTTACGATTTTTAGCAGCCATTTCTCCAGTCTTCAGTATTACTTTAAGAAATCAGGAAGTTTATTTTAACTTTTTTGGGTGGTAAAATGTGACCTGATCATGTTCTTGATGTGTTTTGTGAGATATGTGACCCTGGACCACAAAATCATTCATAAGTCGCACGGCTATATTTGTAGCAATAGCCAACAATACACTGTATGGGTCAAAATTATCGATTTTTCTTTTATGCCAGCAATAATTAAGATATTAAGTAAGGATCATGTTCCATGAAGATATTTTGTACATTTCCTACCGTAAATATATCAAAAATGAGTGAATATGCATTGCTAAGGTCTTCATTTGGACAACTTTGAAGGCAATTTTCTCAGTATTTTGATTTTTTTGCACGCTCAGATTCAGTTGTATCTCAGCCAAATATTGTCCTATCCTAACAAACCATACATCAACGGAAAGATTATTTATTCAACTTTCAGATGATGTATAAATCTCAATTTCAAAAAATTGACCCTTATGACTGGTTTAGTAGTCCCGGGTCACATATACCTAATAATGCCTTCAGCTGTATAGAATTAACGTTAAACTAGAGGTATTTTTGAACCAAAAGCTCTCTTTAATTGCATTTGTATTGCCATATGTTTTCTGTGTATCATTCCACAGCTTTCTCATGGGATTTTAATATGGTGCTTCAGCAAAAATAATAGCATTAATATGTGCATGTGCCAATATAAAGCTGATTTGACCACAGATTATTTGTATCAAGCTTTCAAGGTAAATCTTGTAGATTTGTTAGCTGAATATGCTAATGGATAAATTTAGCTTTTTCTGCTTTTCAGTGTTTAAATGTTGCTTTAATGTCTTTAAAATGTTCTGTCCTTCTGTCCAGCAGATTTTTTTTAAGTGTTATTGCACACATATTTGGCTCATGTCCCCTAGGCAGCTCTGTTTTTTTTAATTGAACTTTTATTAACCTGGAAAGCATGACCCTTGCTACAGTCATAAAATTTTAATCTCCTTTTCATCTTGTTTCCATAACAGCAGACTTGGGTTTTTATACTTTTACTTTCCATTCTTTCTCTTTAGAAATGTGTAATATAATATGCAAGCTAATCTCTGTGCATTCAGATATCATGAGCCAATTAGAAGCATTTATTTTTGCTTAGAACAAACTTAATGTCCCAAAAATGAATTTTATTTTTTTTAATACCCACCGATATGCACTTTTTCTTTTTAAATGGACAATTGTAGAATTACAAATATGGTGACTTTTTGTATACAAATGGTATAAAATGATGTACATACACACACACACACACACACATATCTTCCAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08800360_08805384.mRNA True 3117 mRNA 0.36 9 8798407 8805384

Neighbor

gene id symbol gene type direction distance location
CI01000016_08769141_08795202 NA coding downstream 2848 8768822 ~ 8795559 (-)
CI01000016_08741387_08746007 NA coding downstream 52341 8740982 ~ 8746066 (-)
CI01000016_08642218_08643021 NA coding downstream 155386 8641441 ~ 8643021 (-)
CI01000016_08605369_08623062 STK31 coding downstream 175345 8605247 ~ 8623062 (-)
CI01000016_08598259_08602660 NPY coding downstream 195747 8598231 ~ 8602660 (-)
CI01000016_08833925_08836497 NA coding upstream 28106 8833490 ~ 8836497 (-)
CI01000016_08851218_08869647 IFFO1B coding upstream 45488 8850872 ~ 8869647 (-)
CI01000016_08871984_08874796 OPN9 coding upstream 66600 8871984 ~ 8874796 (-)
CI01000016_08881761_08888177 GAPDH coding upstream 76167 8881551 ~ 8888237 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 coding upstream 87214 8888833 ~ 8894737 (-)
G98711 NA non-coding downstream 19813 8778362 ~ 8778594 (-)
G98710 NA non-coding downstream 32949 8765130 ~ 8765458 (-)
G98660 NA non-coding downstream 39782 8753719 ~ 8758625 (-)
G98630 NA non-coding downstream 60011 8734076 ~ 8738396 (-)
G98713 NA non-coding upstream 3166 8808550 ~ 8808992 (-)
G98714 NA non-coding upstream 5045 8810429 ~ 8811232 (-)
G98708 NA non-coding upstream 9461 8814845 ~ 8815701 (-)
G98709 NA non-coding upstream 11030 8816414 ~ 8816889 (-)
G98715 NA non-coding upstream 65891 8871275 ~ 8871516 (-)
G97341 NA other downstream 2638686 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3380190 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3467561 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 3875003 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 4867356 3920055 ~ 3931162 (-)
CI01000016_08926089_08945071 NA other upstream 131405 8925960 ~ 8945229 (-)
G98679 NA other upstream 429612 9234996 ~ 9239929 (-)
G98691 NA other upstream 450718 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 704238 9509622 ~ 9512428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010574 tnfrsf1a coding NC_007127.7 CM002900.2 17060758 ~ 17072561 (-)