CI01000016_08851218_08869647 (IFFO1B)


Basic Information

Item Value
gene id CI01000016_08851218_08869647
gene name IFFO1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8850872 ~ 8869647 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08851218_08869647.mRNA
ATAGCAGCAGTGGTGTGTTCCTCATTTCTGATTGCCTGGACCCCCTATGCGATTGTTTCCCTCTATTCCGCTTTGACTGCCAGAGAAGAGCACCTCGGGGAAGACGGAGGAACTCCTCTCCCGGGCGGAATATCAGGAGCAGCCGTCGGCCATGGCGGAGGGTTCTCTGACGTCTTTGGGTTTCCGTTCCTCATTAACTGGACCTCTTCAGAACACTTCGGAGATGCTTTTGGTACCTGGAAGAACATGACTTCAGATCATTCCCATTCAGTAGAGCATCATGGATCCAGTTCATCTGTGGGTTCTGCACATGGAGGAATGGATGAACACCGGTCACATCTTGTGTCCATCCTGAAGCCAGAGGTCACACTCATCCCTGCTATTCTTGCCAAGTCCCACTGCATGATAAACCCCTTCATCTACCAGATCATGAACCGTGACTTCAGGGAGGACGTCTATGATCTCCTGTGCTTGAGAGGAAAAGATGGAGAAAGAAGGAGAGGAAGGAGCACAAGTGGAAGTGATTCTTATGGGCATGGTGGAAGCGTCACTCTCTCTTATATTCACAGCTGGAGAAGAAGAAGCACACCTACTAGGCAGCCATCTGGGGAGCGAGTGAAAAAAGATTCCTCACGGAAGAGTAGAGGGAAGAGAGGGTCCTGTCAGGACAATGCGTCAGTCGGGTGGGCATCCTTGGATACTACAACCTTAGATACACAGGCCAACTTAGATAGAGAGAGAGGGAAAGAGGCTGCTGTCTTCGGAGCTCCTGACCCATCCTCTTTTTTCCTCGGAGAACAACCCATCCCTGCTGGCGTCCCCCAAACCGCACTTGACCTTACGGCATCTTCTTACCTGCACTTCAGTCCATCCCTCCACTGGTCCCAACCTCCTCCACCTACAGCAATGGCATTGAGAAACGACCTGGGATCCAATATAAGTGTCCTGAAGACCCTCAATCTGCGGTTCCGATGCTTTCTGGCTAAAGTGCATGAACTGGAGAGACGCAATAAGATATTGGAGTTACAGCTTCAGCAGGCTTTAAACAGCAACAGTGCGGGTGGATGCATGGAAGACGGAAAGACTAAAGAAATTGGTGTCCAGACTGGGTTTATTGGGCCTATTGCTGTCCGGCCTGGGTCTCTGTCCTTCCAAAACACTAACAACTCTGCCAAAAGACCCACTACGTTGTTTATGCCTTCTCTCACGACTGTCCTCAAGCTTGAGCCCAATAAAGCTGATGATGGGATCACAACTGACTCAAACACCAACAGAAATCCAACCATCACGGTTAGTCTGTCAACACCCACCACCGAATCCGCCTCGGCCAACACCAATAACTCTAATAATACTCCACAAGTAAGCAGCATTGGCATCGGGACGTCTCCCAACCCTCCTCCTCGCTTCCTCCCAGGCACTATCTGGTCCTACAACCACACTCGAAAACTGGGAAGCGGGTCAGAGACTCGGGTCACCAGTCCCGGAGTATCGTGGGTCCACCCGGACGGTGTGGGTGTCCAGATAGACACCATCACTCCAGAGATCAGAGCACTTTACAACGTCCTGGCCAAAATCAAAAGGGAAAGGGATGAGTACAAGCGAAGTCAGGCCCACGGCTCTTTTATGTCCAAACCTGCAGCGGCCCGAGCGCCGCATTCCGCCTGCTGTCAGTCACGTATAGCAGCTTTATTTAGGGCTGGACGGACCATCAGTTCGCAAACTCATTACTGTCTGTTGACTCATCAGGACAGATGGGAAGAGGAATACACCATGAGAATGGACATGGAACAGAGAATGAATGATCTACAGGAGGACCTACAGGAGAGTGAAGTATGTCAGGATGAGTTGGCCCTCAAGGTGCAACAGCTGAAAGCTGAACTCGTGCTCTTTAAAGGACTCATGAGCAACAACCTGTCAGAGCTGGACAGTAAGATCCAGGAGAAGGCCATGAAAGTGGACATGGACATCTGCAGACGTATTGACATCACAGCTCGCCTGTGTGATGTCGCCCAACAAAGAAACTGTGAAGATCCAATCAAGATCTTTAAGGTTCCCAGCCCTCAAAATGCCATCACCTCTCGTGCCCGTAAACAAACCTCGCAACCTGCCAATGGCAGCGAGACAGATGAGCCAGTCAGCACCTCTGAGAGTGATGGAGGTGGTGCGCGAGAGGATGAAGTGTGCACCCCTTCAACCCTCCAGATCAATGAAGAGATGCAAAGAATGTTAACCCAACTGCGAGAGTGTGAGTTTGAGGACGACTGTGACTCTCTGGCTTGGGAAGAGACAGAAGAAACGCTCCTTCTGTGGGAGGATTTCCCAGGATGTACTTTCACAGCGGACACTAGTCAGGGCGAGGAGGAGTGTTTGGAAAAGGTGATTAAGGACACTGAATGTCTTTTTAAGTCCAGGGAGAAGGAATATCAGGAGACTATAGACCAGATTGAGTTGGAACTTGCCACAGCAAAGTCGGACATGAACCGCCATCTTCACGAATATATGGAGATGTGTAGTATGAAGAGAGGACTGGATGTGCAGATGGAAACCTGCAGGAGACTCATAACTCAGAGTGGAAACAAGTATGCATATATCCACAAACAAATGGGTTTTTGACATTTTTGAAACTGTTAACATGGTTATTCTTAACCCTGGGTTATTTTGTTTCACACTGTTCTGTATTCTTGATACTAAGATTTTTAGATTTCACACTGTACATTTAACAGGGTTATTATTGTTAATTCAAAGTAAAACTAGGGCTGGATCTATTCCTATTTTGAAAAACCGATATCGATACTTAAATCCCAAGAATTGATCTTTTGGTCTATGCTGTTTTACGGTTGATGAATGAACAAACCTTTGTAGTAAGTAAGCAAGTAAGTAAAGCTTTATTTATATAGCACCTTTTAAAACAGTGTTTACAAAGTGCTTTACAGAATAGAAATACACAGAGAAGAAAAAA

Function

symbol description
iffo1b Predicted to be located in intermediate filament. Orthologous to human IFFO1 (intermediate filament family orphan 1).

GO:

id name namespace
GO:0005882 intermediate filament cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08851218_08869647.mRNA True 2959 mRNA 0.48 11 8850872 8869647

Neighbor

gene id symbol gene type direction distance location
CI01000016_08833925_08836497 NA coding downstream 14375 8833490 ~ 8836497 (-)
CI01000016_08800360_08805384 NA coding downstream 45488 8798407 ~ 8805384 (-)
CI01000016_08769141_08795202 NA coding downstream 55313 8768822 ~ 8795559 (-)
CI01000016_08741387_08746007 NA coding downstream 104806 8740982 ~ 8746066 (-)
CI01000016_08642218_08643021 NA coding downstream 207851 8641441 ~ 8643021 (-)
CI01000016_08871984_08874796 OPN9 coding upstream 2337 8871984 ~ 8874796 (-)
CI01000016_08881761_08888177 GAPDH coding upstream 11904 8881551 ~ 8888237 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 coding upstream 22951 8888833 ~ 8894737 (-)
CI01000016_08906943_08914821 NOP2 coding upstream 36965 8906612 ~ 8914940 (-)
CI01000016_08920718_08923668 EMG1 coding upstream 50818 8920465 ~ 8924048 (-)
G98709 NA non-coding downstream 33983 8816414 ~ 8816889 (-)
G98708 NA non-coding downstream 35171 8814845 ~ 8815701 (-)
G98714 NA non-coding downstream 39640 8810429 ~ 8811232 (-)
G98713 NA non-coding downstream 41880 8808550 ~ 8808992 (-)
G98711 NA non-coding downstream 72278 8778362 ~ 8778594 (-)
G98715 NA non-coding upstream 1628 8871275 ~ 8871516 (-)
G98672 NA non-coding upstream 46275 8915922 ~ 8916673 (-)
G98658 NA non-coding upstream 54863 8924510 ~ 8925768 (-)
G98694 NA non-coding upstream 188165 9057812 ~ 9058118 (-)
G98776 NA non-coding upstream 231954 9101601 ~ 9101813 (-)
G97341 NA other downstream 2691151 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3432655 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3520026 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 3927468 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 4919821 3920055 ~ 3931162 (-)
CI01000016_08926089_08945071 NA other upstream 67142 8925960 ~ 8945229 (-)
G98679 NA other upstream 365349 9234996 ~ 9239929 (-)
G98691 NA other upstream 386455 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 639975 9509622 ~ 9512428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010577 iffo1b coding NC_007127.7 CM002900.2 17121986 ~ 17162843 (-)