CI01000016_08881761_08888177 (GAPDH)


Basic Information

Item Value
gene id CI01000016_08881761_08888177
gene name GAPDH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8881551 ~ 8888237 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08881761_08888177.mRNA
ACTCTCTAAAAAGATTGTTCTTGTTTCAAACAGGAAAACAGTGTCCCATTTAAAACAAGAATGATGTTTCTTCAATCGTTTTTCTGGTTTTCTTGGATTTACAACTTTTCTCCAGAGGACAAGACCAAATTAGGCATCATGGTTAAAGTTGGTATCAACGGATTCGGTCGCATTGGGCGTCTGGTGACCCGTGCTGCTTTCCAGTCCAAGAAAGTTTACATGTTCAAGTATGACTCCACCCATGGCAAGTACAAGGGTGAGGTTAAGGCAGAAGGCGGCAAGTTGGTCATTGACGGTCACGCCATCTCCGTCTTCAGCGAGAGGGACCCAGCCAACATTAAATGGGGTGATGCAGGTGCCACATATGTTGTGGAGTCTACCGGTGTCTTCACTACCATTGAGAAGGCTTCTGCTCACCTTAAGGGCGGTGCCAAGAGAGTCATCATCTCTGCCCCCAGTGCAGATGCCCCTATGTTTGTCATGGGTGTCAACCATGAGAAATATGATAATTCCCTTAAAGTTGTCAGCAATGCCTCCTGCACCACCAACTGCCTGGCTCCCTTGGCCAAGGTCATCAATGACAACTTTGTCATCATTGAAGGTCTTATGAGCACTGTTCATGCCATCACAGCCACACAGAAGACCGTTGACGGGCCCTCTGGGAAACTGTGGAGGGATGGCCGTGGTGCCAGTCAGAACATTATCCCAGCCTCCACTGGGGCTGCCAAGGCTGTGGGCAAAGTCATTCCTGAGCTCAATGGCAAGCTTACTGGTATGGCCTTCCGTGTCCCCACCCCCAATGTGTCTGTGGTGGATCTGACCGTCCGCCTTGAGAAACCTGCCAAGTATGATGATATCAAGAAAGTGGTCAAGGCTGCAGCTGATGGACCCATGAAAGGCATTCTGGGATACACAGAGGACCAGGTTGTGTCCACTGACTTCAATGGGGATTGTCGCTCCTCTATCTTTGATGCTGGTGCTGGCATCGCCCTCAACGATCACTTTGTCAAGCTGGTCACATGGTATGACAACGAGTTCGGGTACAGCAACCGTGTTTGTGACCTGATGGCACACATGGCCTCCAAGGAGTAGATGTGACCTTTCTGCCACTTTTGATATACGTGACCCACCTCTCATCTGGTTGGATGTTTGCACCACATGCCTGGAAGGAAATTACATGCTTAACTTGAAGACCAATGTTATTTTTATATGAAGATGCTCTGTTCTGTTTTTGTGAGATTTAAAAATGGATGTTGACTTCAAAAGGCTTTTCTGTCTGCTAACAACCTGTGACAGAATAAA

Function

symbol description
gapdh Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; microtubule binding activity; and peptidyl-cysteine S-nitrosylase activity. Predicted to be involved in several processes, including glycolytic process; peptidyl-cysteine S-trans-nitrosylation; and protein stabilization. Predicted to act upstream of or within apoptotic process and glucose metabolic process. Predicted to be located in cytoplasm; microtubule cytoskeleton; and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; integument; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDH (glyceraldehyde-3-phosphate dehydrogenase).

GO:

id name namespace
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08881761_08888177.mRNA True 1302 mRNA 0.48 12 8881551 8888237

Neighbor

gene id symbol gene type direction distance location
CI01000016_08871984_08874796 OPN9 coding downstream 6755 8871984 ~ 8874796 (-)
CI01000016_08851218_08869647 IFFO1B coding downstream 11904 8850872 ~ 8869647 (-)
CI01000016_08833925_08836497 NA coding downstream 45054 8833490 ~ 8836497 (-)
CI01000016_08800360_08805384 NA coding downstream 76167 8798407 ~ 8805384 (-)
CI01000016_08769141_08795202 NA coding downstream 85992 8768822 ~ 8795559 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 coding upstream 4361 8888833 ~ 8894737 (-)
CI01000016_08906943_08914821 NOP2 coding upstream 18375 8906612 ~ 8914940 (-)
CI01000016_08920718_08923668 EMG1 coding upstream 32228 8920465 ~ 8924048 (-)
CI01000016_08926089_08945071 NA coding upstream 37723 8925960 ~ 8945229 (-)
CI01000016_08947581_08961131 ZYX coding upstream 57911 8946148 ~ 8961131 (-)
G98715 NA non-coding downstream 10035 8871275 ~ 8871516 (-)
G98709 NA non-coding downstream 64662 8816414 ~ 8816889 (-)
G98708 NA non-coding downstream 65850 8814845 ~ 8815701 (-)
G98714 NA non-coding downstream 70319 8810429 ~ 8811232 (-)
G98713 NA non-coding downstream 72559 8808550 ~ 8808992 (-)
G98672 NA non-coding upstream 27685 8915922 ~ 8916673 (-)
G98658 NA non-coding upstream 36273 8924510 ~ 8925768 (-)
G98694 NA non-coding upstream 169575 9057812 ~ 9058118 (-)
G98776 NA non-coding upstream 213364 9101601 ~ 9101813 (-)
G98778 NA non-coding upstream 214986 9103223 ~ 9103458 (-)
G97341 NA other downstream 2721830 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3463334 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3550705 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 3958147 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 4950500 3920055 ~ 3931162 (-)
G98679 NA other upstream 346759 9234996 ~ 9239929 (-)
G98691 NA other upstream 367865 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 621385 9509622 ~ 9512428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location