CI01000016_08906943_08914821 (NOP2)


Basic Information

Item Value
gene id CI01000016_08906943_08914821
gene name NOP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8906612 ~ 8914940 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08906943_08914821.mRNA
ACGCCGGACTGGTTTCTCTGTTTCGAACCTTACAGAAGTTAAAAAAAAAACAAGAATGTCAAATCTGTTCAATTAATTACTTTACTTGTTACCCCAGAACAACTTTGTAGGTGTCAATCATGGGCAGGAGGTTGGATCCCACCATTAAGGTGAAACGAGGACCTGGACGCAAGGCCAGGAAACAGAAGGGAGCAGAAACTGAGCTGTCCAAGTTTTTGGTTGATGAAGAGGAAAAAGAGGAAAAGGGTGATTTAAAGGAAGATGAGGAGGAAGAGGATACTGTGCAGGCAAATATTGATGAGTCGGAACAATTCAAACTCCCTGCTGCGGCGGAGAGAGCCAAGGAAGGTCTTTTACTAATGGACCTGCAGACCATCCATCAGAGGATCAAAGATAATGTGGATGTGCTGTCTCACTTCAGTGAGAAGAGAGAGAAGGGCAAGGCGAGATCGGAGTATCTCTCTCTGCTGCGCTCTGACCTCTGCACCTATTACAGCTACAACGAGTTCCTCATCAGCAAACTCATGGACCTTTTCTCTCTCTCTGAGCTGATTGATTTTCTTGAGGCAAATGAAATTCACCGACCAGTCACCATCAGAACCAACACCCTGAAAACCAGAAGGAGAGACTTGGCTCAGGCTTTGATTAACAGAGGAGTAAACCTGGATCCATTGGGGAAATGGTCCAAAGTAGGGCTGGTTATCTATGACTCTTCTGTTCCCATAGGAGCAACTCCAGAATATTTGGCAGGCCAGTACATGCTTCAAGGTGCATCATCATTTCTTCCTGTAATGGCGCTGTCTCCCCAGGAGGGGGAGTCAGTGTTAGACATGAGTGCTGCTCCAGGAGGCAAGACCACATATATGGCTCAGCTCATGAGGAACACAGGCATGATTGTGGCTAATGACGCTAATGCAGACAGACTGAAGAGTGTGGTGGGAAACATCCATCGTCTCGGTGTCACTAACGCGGTCATCTGCAACTATGACGGCAGACAATTCCCAAAGGTGATGGGAGGTTTCGACAGAGTGCTTTTGGATGCTCCTTGCTCAGGTACAGGAGTCATTTCCAAAGATCCGGCAGTTAAAACTAGCAAGGATGAGGCTGATATTCTTCGCTCGGCTCACCTGCAGAAGGAGCTCATCCTGTCAGCTATTGACTCTGTCAATGCTGATTCTTCATCTGGCGGATACCTTATTTACTGCACATGCTCTATTATGGTTGAGGAGAATGAGTGGGTGGTGGACTACGCTCTGAAGAAGAGAAATGTTAAGCTGGTCCCCACTGGACTAGACTTTGGCAAGGAGGGATTCACCAGATTCAAACAGAGACGTTTCCATCCTTCTCTGAAACTGTCTCGCCGATTCTACCCTCATTCCCACAACATGGATGGATTTTTTGTGGCCAAGCTAAAGAAGCTGTCTAACACCATCCCTACAGCACCAAAAGAAACAGAAAATGAAGTAGAATCTACAAAAATGGAGACTGCAGCCTCATCGGCGCAGATCCAAAAGCCAGAATCTAAGGAACAGAAGCCCGCTTCAACTCCAGCGAAAAGCAACATGGGCAAGAAGCAGAAATTAAACCAGAAAAGATCTGAGCCGCCCATCATCACAAAGAAAGCTGGAGTGAAATCTCAGAATAAAAAAGCTGATGGTCCCAAAAAAGCCAAAATTGCCAAGTTAGATGGTGAAGCATCCAAAAAGGTTGAGAGACCTGACAAAAAGCAGAAGGTAAAAGAACAGAATGGAGATTCAACGAAAGGGGTAGAAAAGGAGAAGGGGAGCCAGTTTGAGAAGAAAAGCAAAGCGAAAAGGAGGAATTTGAGGAAGAAAAGAATAGGGAAAAACAAATTTAAAAAGTTAAAAAAGATGCTTGGACAAGAAAGTGGCCAGTGAGATTCATTGCTATGAATTGACATGGACCTGTATGGTCAGGACTGGGATCTGTCTGTGGTTTGACACAAGAAGTTAAACCAATCCCAGCCTGCTCTTGGGGACTCAAAGATCATCCTTCAGAAATGTACACAATGATTTTGTGTATTTATCTTGCTTCTCAATACTTTTGTCAACCTTATTACTTTACCGCAAGGTTTTCTTTAAACTTGTGGTACAAGTGTTATAAATGTATATTGTCCATTTTAATGGATTTTGTTTTGAAAAAGAAACCTTTAACTGAATGTGAGTATGTGGTCTGTTTTTTTTTTTTTTTTTCCTCATACCTATTAAA

Function

symbol description
nop2 Predicted to enable rRNA (cytosine-C5-)-methyltransferase activity. Predicted to be involved in maturation of LSU-rRNA and rRNA base methylation. Predicted to act upstream of or within RNA processing; methylation; and ribosome biogenesis. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; mesoderm; nervous system; neural tube; and pectoral fin. Orthologous to human NOP2 (NOP2 nucleolar protein).

GO:

id name namespace
GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity molecular_function

KEGG:

id description
K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08906943_08914821.mRNA True 2229 mRNA 0.44 12 8906612 8914940

Neighbor

gene id symbol gene type direction distance location
CI01000016_08893013_08893496 NPPCL, ANFC1 coding downstream 11919 8888833 ~ 8894737 (-)
CI01000016_08881761_08888177 GAPDH coding downstream 18375 8881551 ~ 8888237 (-)
CI01000016_08871984_08874796 OPN9 coding downstream 31816 8871984 ~ 8874796 (-)
CI01000016_08851218_08869647 IFFO1B coding downstream 36965 8850872 ~ 8869647 (-)
CI01000016_08833925_08836497 NA coding downstream 70115 8833490 ~ 8836497 (-)
CI01000016_08920718_08923668 EMG1 coding upstream 5525 8920465 ~ 8924048 (-)
CI01000016_08926089_08945071 NA coding upstream 11020 8925960 ~ 8945229 (-)
CI01000016_08947581_08961131 ZYX coding upstream 31208 8946148 ~ 8961131 (-)
CI01000016_09060801_09086358 CLCN1B coding upstream 145582 9060522 ~ 9088199 (-)
CI01000016_09107780_09122244 CASP2 coding upstream 192469 9107409 ~ 9122290 (-)
G98715 NA non-coding downstream 35096 8871275 ~ 8871516 (-)
G98709 NA non-coding downstream 89723 8816414 ~ 8816889 (-)
G98708 NA non-coding downstream 90911 8814845 ~ 8815701 (-)
G98714 NA non-coding downstream 95380 8810429 ~ 8811232 (-)
G98713 NA non-coding downstream 97620 8808550 ~ 8808992 (-)
G98672 NA non-coding upstream 982 8915922 ~ 8916673 (-)
G98658 NA non-coding upstream 9570 8924510 ~ 8925768 (-)
G98694 NA non-coding upstream 142872 9057812 ~ 9058118 (-)
G98776 NA non-coding upstream 186661 9101601 ~ 9101813 (-)
G98778 NA non-coding upstream 188283 9103223 ~ 9103458 (-)
G97341 NA other downstream 2746891 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3488395 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3575766 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 3983208 4918975 ~ 4922518 (-)
G98679 NA other upstream 320056 9234996 ~ 9239929 (-)
G98691 NA other upstream 341162 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 594682 9509622 ~ 9512428 (-)
G99178 NA other upstream 899421 9814361 ~ 9814955 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location