CI01000016_08920718_08923668 (EMG1)


Basic Information

Item Value
gene id CI01000016_08920718_08923668
gene name EMG1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8920465 ~ 8924048 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08920718_08923668.mRNA
AGTAATTCATTAATGATGAATATTTTGTACGTTTATTCTCTAGTGTAAATACAGTTTGAGGTCTGAGGTTTGAATGTATCATAAATGTCACTCTTATATTTGAAGAAAACGTTGAGGTGTGTTTTGCATGTGTCCTTTTCTGGTGTATAGCGATTGTGAAAATTCAGGGTTTGTTTTGATAACACTAGCAAAAAAATCGACAATTCTTGGTGTTTAAAATAGTAAAATGTATTTTTTTTTTTTTTTTTTTTTTTCATAATAACATAATGTCATTTAATAGGTGGTCAAGTACAGTATTTTATGATACATTATTAACTATGCAGAGAGACCGTCATCAGCGTGCGCCACTCTGAACAAACGTGTCGTAGTTCTGTGTCAACATGGCTGCACGCGCTGGAGACAAGCGTGGTCTGGAGCATTTAGATGAATATGAACCAAAACCGGCAAAACAGCAAAGAAGTCTGCACGATCAGATGACGGAAAAGCGTCTTGTTGTTGTTTTAGAAGGAGCGACGCTTGAAACCGTAAAGGTTGGAAAGACATTCGAGTTGCTGAACTGTGATCAGCATAAGAGTATGATAATAAAGAGCGGACGAGACCCTGGAAAGATTCGCCCCGATATCACACATCAGTGCCTGCTGATGTTACTGGACAGTCCTTTGAACAGAGCTGGACTGCTGCAAGTGTACGTTCACACAGAGAAGAACGTTTTGATCGAGATCAACCCACAGACAAGAATTCCTCGCACCTTTGCACGATTTTGTGGACTCATGGGTAAATTCACATGGAGGCTCCATTTGCACATTAACTCTAACGTCAGTATTGTAATGGTCCAGCTCCTGCACAAGATGAGTGTGAGAGCAGCTGATGGCTCTCAACGTTTGTTGAAGCTCATTAAAAATCCAGTGTCGGACCACCTGCCACCTGGATGCCCCCGATTTTCCACATCGTTCAAAGCAGGAGATGCTGTATGTCCCAGAACAGTCGTCCCCAAAGATGGACCTGCCGCTATTGTCATTGGAGCATTTGCACATGGAACAGTGAATGCCGACTATACAGAGAAGACCGTGTCCATCAGTAACTATCCTTTATCTGCAGCTCTGACCTGTGCCAAGATGTGTTCAGCGTTTGAGGAGGTCTGGGGAGTGTTATGACAAAATCAAACTGTTATTAACTGTCATGTTTATGCCTGATTGAGGAACAGACCTTTGGATTGCGTTCTGTGTGTATGTGTTTCATTCCTTTGAGCAAAAATTGTGTTATGTGACATCACAACAGAGGAGAACATTTTATGTCAAAATTGTAACACAATTTTAACACACACTGAAGCAAACATTTACACTCTTTAAAATGTGGAGTATTAAACCTAAATGTCTTTTTGTATAAGTCTATACATTTAGTAATAAA

Function

symbol description
emg1 Predicted to enable rRNA (pseudouridine) methyltransferase activity and rRNA binding activity. Predicted to be involved in rRNA base methylation. Predicted to act upstream of or within ribosome biogenesis. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in Bowen-Conradi syndrome. Orthologous to human EMG1 (EMG1 N1-specific pseudouridine methyltransferase).

GO:

id name namespace
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14568 EMG1, NEP1; rRNA small subunit pseudouridine methyltransferase Nep1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08920718_08923668.mRNA True 1407 mRNA 0.40 5 8920465 8924048

Neighbor

gene id symbol gene type direction distance location
CI01000016_08906943_08914821 NOP2 coding downstream 5525 8906612 ~ 8914940 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 coding downstream 25772 8888833 ~ 8894737 (-)
CI01000016_08881761_08888177 GAPDH coding downstream 32228 8881551 ~ 8888237 (-)
CI01000016_08871984_08874796 OPN9 coding downstream 45669 8871984 ~ 8874796 (-)
CI01000016_08851218_08869647 IFFO1B coding downstream 50818 8850872 ~ 8869647 (-)
CI01000016_08926089_08945071 NA coding upstream 1912 8925960 ~ 8945229 (-)
CI01000016_08947581_08961131 ZYX coding upstream 22100 8946148 ~ 8961131 (-)
CI01000016_09060801_09086358 CLCN1B coding upstream 136474 9060522 ~ 9088199 (-)
CI01000016_09107780_09122244 CASP2 coding upstream 183361 9107409 ~ 9122290 (-)
CI01000016_09129190_09132103 NA coding upstream 203560 9127608 ~ 9132103 (-)
G98672 NA non-coding downstream 3792 8915922 ~ 8916673 (-)
G98715 NA non-coding downstream 48949 8871275 ~ 8871516 (-)
G98709 NA non-coding downstream 103576 8816414 ~ 8816889 (-)
G98708 NA non-coding downstream 104764 8814845 ~ 8815701 (-)
G98714 NA non-coding downstream 109233 8810429 ~ 8811232 (-)
G98658 NA non-coding upstream 462 8924510 ~ 8925768 (-)
G98694 NA non-coding upstream 133764 9057812 ~ 9058118 (-)
G98776 NA non-coding upstream 177553 9101601 ~ 9101813 (-)
G98778 NA non-coding upstream 179175 9103223 ~ 9103458 (-)
G98675 NA non-coding upstream 181346 9105394 ~ 9107226 (-)
G97341 NA other downstream 2760744 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3502248 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3589619 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 3997061 4918975 ~ 4922518 (-)
G98679 NA other upstream 310948 9234996 ~ 9239929 (-)
G98691 NA other upstream 332054 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 585574 9509622 ~ 9512428 (-)
G99178 NA other upstream 890313 9814361 ~ 9814955 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010584 emg1 coding NC_007127.7 CM002900.2 17254489 ~ 17258111 (-)